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Mutant Information

Mutant Name	FN1282-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1282-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 43

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24666887	G-A	HET	INTERGENIC
SBS	Chr1	28891196	A-G	HET	SYNONYMOUS_CODING
SBS	Chr1	31546841	T-C	HET	INTERGENIC
SBS	Chr1	31836183	A-T	HET	INTRON
SBS	Chr1	33187588	A-T	HET	INTRON
SBS	Chr1	8675325	C-T	HOMO	INTERGENIC
SBS	Chr10	17658548	C-A	HET	INTRON
SBS	Chr10	20768531	A-T	HET	UTR_5_PRIME
SBS	Chr10	2410846	G-A	HOMO	INTERGENIC
SBS	Chr10	5828868	C-T	HOMO	INTERGENIC
SBS	Chr10	9694198	T-C	HOMO	INTERGENIC
SBS	Chr11	10204655	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g18130
SBS	Chr11	14602322	C-T	HOMO	INTERGENIC
SBS	Chr11	3188762	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g06600
SBS	Chr11	6094394	G-A	HET	SYNONYMOUS_CODING
SBS	Chr12	17309110	T-G	HET	INTERGENIC
SBS	Chr12	23102114	G-A	HET	UTR_5_PRIME
SBS	Chr12	5372592	G-A	HOMO	INTERGENIC
SBS	Chr2	11992131	C-T	HET	SYNONYMOUS_CODING
SBS	Chr2	16374949	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g27630
SBS	Chr3	16676488	G-T	HET	INTRON
SBS	Chr3	18090985	G-C	HET	INTRON
SBS	Chr3	20624583	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	2793590	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g05580
SBS	Chr3	32924155	A-G	HET	INTERGENIC
SBS	Chr4	10961282	C-T	HOMO	INTERGENIC
SBS	Chr4	12304932	C-T	HOMO	INTERGENIC
SBS	Chr5	16024197	C-T	HET	INTERGENIC
SBS	Chr5	17157330	A-T	HOMO	INTERGENIC
SBS	Chr5	17879767	A-T	HOMO	INTERGENIC
SBS	Chr5	24730672	T-G	HET	INTRON
SBS	Chr5	25878251	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g44460
SBS	Chr5	8489173	T-C	HOMO	INTERGENIC
SBS	Chr6	21283294	G-T	HET	INTERGENIC
SBS	Chr6	23495551	G-A	HET	INTRON
SBS	Chr6	23858296	A-G	HET	INTERGENIC
SBS	Chr7	18511996	A-T	HOMO	INTRON
SBS	Chr7	7379412	C-G	HET	INTERGENIC
SBS	Chr8	14432424	C-T	HOMO	INTRON
SBS	Chr9	12947541	G-C	HET	INTERGENIC
SBS	Chr9	3248980	G-C	HET	INTERGENIC
SBS	Chr9	6982883	C-T	HET	INTERGENIC
SBS	Chr9	8011795	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g13700

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1210081	1210089	8
Deletion	Chr11	2717899	2717905	6	LOC_Os11g05840
Deletion	Chr3	2868949	2868951	2
Deletion	Chr11	3195954	3195971	17
Deletion	Chr2	3281041	3281042	1
Deletion	Chr11	3468433	3468437	4
Deletion	Chr1	3767779	3767780	1
Deletion	Chr2	4492662	4492663	1
Deletion	Chr12	5600633	5600655	22
Deletion	Chr5	7124822	7124823	1
Deletion	Chr11	8804580	8804584	4
Deletion	Chr2	11692862	11692874	12
Deletion	Chr5	12059061	12059066	5
Deletion	Chr9	12973540	12973541	1
Deletion	Chr9	16795687	16795693	6
Deletion	Chr6	17821244	17821256	12
Deletion	Chr7	18516391	18516398	7
Deletion	Chr8	18745209	18745215	6	LOC_Os08g30450
Deletion	Chr12	20979521	20979523	2
Deletion	Chr7	21478373	21478385	12
Deletion	Chr2	21740897	21740910	13	LOC_Os02g36110
Deletion	Chr12	22221347	22221350	3
Deletion	Chr3	23447569	23447573	4
Deletion	Chr5	25990512	25990520	8
Deletion	Chr2	26239410	26239419	9
Deletion	Chr11	28275725	28275795	70
Deletion	Chr4	34935143	34935144	1
Deletion	Chr1	35500839	35500848	9	LOC_Os01g61380
Deletion	Chr3	36141704	36141706	2

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	2564497	2564498	2
Insertion	Chr12	22918377	22918377	1
Insertion	Chr6	26153097	26153099	3

No Inversion

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	7336063	Chr1	20257176	LOC_Os01g36500
Translocation	Chr9	7641633	Chr1	26359239
Translocation	Chr8	10754458	Chr6	19260584	LOC_Os08g17580
Translocation	Chr8	11492916	Chr2	9474097
Translocation	Chr11	28280603	Chr3	7009451

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