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Mutant Information

Mutant Name	FN1283-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1283-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8519462	T-A	HOMO	INTERGENIC
SBS	Chr1	8519463	A-T	HOMO	INTERGENIC
SBS	Chr1	31848320	C-T	HET	INTERGENIC
SBS	Chr1	40673511	C-A	HOMO	INTERGENIC
SBS	Chr2	21914154	T-G	HET	INTERGENIC
SBS	Chr2	21914163	C-T	HET	INTERGENIC
SBS	Chr3	2704645	C-T	HET	INTERGENIC
SBS	Chr3	7174463	A-G	HET	INTERGENIC
SBS	Chr3	14116335	G-A	HET	INTERGENIC
SBS	Chr3	14245980	G-A	HET	INTERGENIC
SBS	Chr6	26140723	G-A	HET	INTERGENIC
SBS	Chr8	2781630	T-C	HET	INTERGENIC
SBS	Chr8	6537281	A-T	HET	INTRON
SBS	Chr8	25677015	T-A	HOMO	UTR_3_PRIME
SBS	Chr9	8925257	T-C	HET	INTERGENIC
SBS	Chr9	12152945	A-C	HOMO	INTERGENIC
SBS	Chr9	21110604	C-A	HOMO	INTERGENIC
SBS	Chr10	11172672	T-A	HOMO	INTERGENIC
SBS	Chr10	16277625	T-C	HOMO	INTERGENIC
SBS	Chr11	1789406	C-T	HOMO	INTRON
SBS	Chr11	11443687	T-A	HOMO	INTRON
SBS	Chr11	13818177	A-G	HOMO	INTERGENIC
SBS	Chr11	21765069	G-A	HET	INTERGENIC
SBS	Chr11	22136979	C-T	HET	INTERGENIC
SBS	Chr11	24033531	G-A	HET	START_GAINED	LOC_Os11g40315
SBS	Chr11	28694633	A-T	HET	INTERGENIC

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	3039551	3039556	5
Deletion	Chr2	6841001	6861000	20000	2
Deletion	Chr5	7194809	7194821	12
Deletion	Chr8	9170845	9170846	1
Deletion	Chr9	10008236	10008241	5
Deletion	Chr2	10074660	10074661	1	LOC_Os02g17500
Deletion	Chr4	11338471	11338476	5	LOC_Os04g20280
Deletion	Chr7	11364698	11364699	1
Deletion	Chr3	11810671	11810675	4
Deletion	Chr6	12132001	12196000	64000	12
Deletion	Chr1	13476850	13476857	7
Deletion	Chr7	14111609	14121784	10175	LOC_Os07g24830
Deletion	Chr6	14156947	14156964	17
Deletion	Chr12	16374158	16374159	1
Deletion	Chr6	16544706	16544707	1
Deletion	Chr8	16838290	16838318	28
Deletion	Chr3	18085970	18085988	18	LOC_Os03g31679
Deletion	Chr11	18757460	18757532	72	LOC_Os11g31910
Deletion	Chr4	20936196	20936212	16
Deletion	Chr4	24916111	24916119	8
Deletion	Chr1	26036623	26036628	5
Deletion	Chr6	26998770	26998777	7
Deletion	Chr1	27128108	27128113	5	LOC_Os01g47460

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	2549378	2549399	22
Insertion	Chr6	21372446	21372451	6	LOC_Os06g36390
Insertion	Chr11	22223380	22223383	4
Insertion	Chr4	20682383	20682385	3
Insertion	Chr6	22672325	22672327	3

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	4720583	5986725
Inversion	Chr11	9970182	11526912	LOC_Os11g20030
Inversion	Chr3	26853480	27216248	LOC_Os03g47870

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	5647112	Chr2	34964690	2
Translocation	Chr8	7183014	Chr7	14111680
Translocation	Chr8	7184351	Chr3	7388791
Translocation	Chr10	7985678	Chr6	15867866	LOC_Os06g27970
Translocation	Chr7	14121769	Chr3	7388800

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