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Mutant Information

Mutant Name	FN1284-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1284-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25486696	A-C	HOMO	INTERGENIC
SBS	Chr1	27799307	C-A	HOMO	INTRON
SBS	Chr1	38693501	C-T	HET	INTERGENIC
SBS	Chr1	38693502	A-T	HET	INTERGENIC
SBS	Chr2	7829438	C-G	HET	INTERGENIC
SBS	Chr2	14554350	T-C	HET	INTRON
SBS	Chr2	20487713	C-G	HET	INTERGENIC
SBS	Chr2	22718639	G-T	HET	INTERGENIC
SBS	Chr3	23844212	G-A	HOMO	UTR_3_PRIME
SBS	Chr3	24165052	C-A	HOMO	INTERGENIC
SBS	Chr4	4300064	T-C	HET	INTERGENIC
SBS	Chr5	19474813	G-A	HOMO	INTERGENIC
SBS	Chr6	9948995	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g17160
SBS	Chr6	24796122	G-T	HET	INTERGENIC
SBS	Chr6	27533243	A-C	HET	INTERGENIC
SBS	Chr6	29868086	C-T	HET	INTERGENIC
SBS	Chr7	7708818	C-G	HET	INTERGENIC
SBS	Chr7	24055878	A-C	HET	UTR_3_PRIME
SBS	Chr7	29448306	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr8	18273468	T-C	HET	INTRON
SBS	Chr8	19623001	C-T	HET	INTERGENIC
SBS	Chr8	24365925	T-A	HOMO	INTERGENIC
SBS	Chr9	3180639	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g06690
SBS	Chr9	3313989	G-T	HOMO	INTERGENIC
SBS	Chr9	8084609	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g13790
SBS	Chr9	13844495	G-A	HET	INTERGENIC
SBS	Chr10	9525800	T-C	HET	INTRON
SBS	Chr10	18949619	A-G	HET	INTERGENIC
SBS	Chr10	19573278	A-T	HET	INTERGENIC
SBS	Chr11	2739679	T-C	HET	INTERGENIC
SBS	Chr11	8555017	C-T	HET	INTERGENIC
SBS	Chr11	8764375	G-A	HET	INTERGENIC
SBS	Chr11	9516451	G-C	HET	INTRON
SBS	Chr11	10154742	G-A	HET	INTERGENIC
SBS	Chr11	20027537	G-A	HOMO	INTRON
SBS	Chr12	9157888	C-A	HET	STOP_GAINED	LOC_Os12g16060
SBS	Chr12	19741952	G-A	HOMO	INTRON

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1451162	1451170	8
Deletion	Chr9	1819600	1819602	2
Deletion	Chr9	3353174	3353175	1
Deletion	Chr9	4044849	4044855	6
Deletion	Chr3	5340610	5340612	2
Deletion	Chr4	9735291	9735296	5	LOC_Os04g17770
Deletion	Chr12	10138520	10138530	10
Deletion	Chr3	10546314	10546319	5
Deletion	Chr3	11321290	11321294	4
Deletion	Chr6	11920193	11920200	7	LOC_Os06g20700
Deletion	Chr8	13978953	13978958	5
Deletion	Chr10	14088328	14088340	12
Deletion	Chr6	14550473	14550496	23
Deletion	Chr7	15970905	15970913	8
Deletion	Chr2	15984253	15984258	5
Deletion	Chr1	17496025	17496148	123
Deletion	Chr11	17596667	17596668	1	LOC_Os11g30290
Deletion	Chr4	17645893	17646123	230	LOC_Os04g29650
Deletion	Chr1	20182400	20182404	4
Deletion	Chr11	21697489	21697490	1
Deletion	Chr9	22172132	22172139	7	LOC_Os09g38530
Deletion	Chr8	22244450	22244451	1	LOC_Os08g35250
Deletion	Chr9	22935638	22935642	4	LOC_Os09g40000
Deletion	Chr6	24544966	24544977	11
Deletion	Chr2	25090446	25090451	5
Deletion	Chr3	26676711	26676713	2
Deletion	Chr8	27753694	27753710	16
Deletion	Chr6	28817001	28834000	17000	4
Deletion	Chr2	33397466	33397467	1
Deletion	Chr1	35637932	35637941	9

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr3	18160800	18160801	2
Insertion	Chr1	41324818	41324821	4
Insertion	Chr11	23920368	23920368	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	4823536	4924075
Inversion	Chr5	4823549	4924085
Inversion	Chr11	10726564	11767144
Inversion	Chr11	17880092	19462955	LOC_Os11g30700
Inversion	Chr10	20802623	20869551	2

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	17879751	Chr5	4897244	LOC_Os11g30700
Translocation	Chr11	19463946	Chr5	4897990
Translocation	Chr3	33797482	Chr1	17496026	LOC_Os03g59370

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