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Mutant Information

Mutant Name	FN1287-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1287-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 43

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12189269	G-A	HET	INTRON
SBS	Chr1	30822066	A-G	HET	INTRON
SBS	Chr1	40225892	C-A	HOMO	INTRON
SBS	Chr1	40225895	T-A	HOMO	INTRON
SBS	Chr10	339069	C-T	HET	INTERGENIC
SBS	Chr10	3753431	A-G	HET	INTERGENIC
SBS	Chr11	13090766	A-T	HET	INTERGENIC
SBS	Chr11	15275959	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g26670
SBS	Chr11	27382432	G-A	HET	INTERGENIC
SBS	Chr12	14850755	C-A	HET	INTERGENIC
SBS	Chr12	20565960	C-T	HET	INTERGENIC
SBS	Chr12	9529143	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g16640
SBS	Chr2	17024515	T-C	HET	SYNONYMOUS_CODING
SBS	Chr2	35282085	G-A	HOMO	INTRON
SBS	Chr2	4052247	A-G	HET	UTR_3_PRIME
SBS	Chr3	17656984	C-T	HET	INTERGENIC
SBS	Chr3	34577392	A-T	HOMO	INTERGENIC
SBS	Chr3	6910565	G-T	HET	INTERGENIC
SBS	Chr4	13341946	T-C	HET	INTERGENIC
SBS	Chr4	33910701	C-A	HET	SYNONYMOUS_CODING
SBS	Chr4	5156198	G-A	HET	INTERGENIC
SBS	Chr4	5519339	G-A	HET	INTRON
SBS	Chr5	12051264	A-C	HOMO	INTERGENIC
SBS	Chr5	16883702	G-A	HET	INTERGENIC
SBS	Chr5	16883706	T-G	HET	INTERGENIC
SBS	Chr5	27542771	A-C	HET	INTRON
SBS	Chr6	12370057	C-G	HET	INTERGENIC
SBS	Chr6	14728388	A-G	HET	INTRON
SBS	Chr6	26357036	T-A	HET	INTRON
SBS	Chr7	16830023	T-A	HET	INTERGENIC
SBS	Chr7	22531424	T-C	HET	INTERGENIC
SBS	Chr7	3407109	C-G	HET	INTERGENIC
SBS	Chr7	492811	C-T	HET	INTERGENIC
SBS	Chr7	8385420	C-A	HET	INTERGENIC
SBS	Chr8	17802107	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g29080
SBS	Chr8	18635102	G-A	HOMO	INTERGENIC
SBS	Chr8	26987926	G-A	HOMO	INTERGENIC
SBS	Chr9	13303370	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g21980
SBS	Chr9	16664748	T-C	HET	INTERGENIC
SBS	Chr9	17428018	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr9	17428019	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g28660
SBS	Chr9	20627322	G-A	HET	INTERGENIC
SBS	Chr9	3568206	C-T	HET	INTERGENIC

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	569001	798000	229000	28
Deletion	Chr8	620925	620936	11
Deletion	Chr3	4331007	4331010	3
Deletion	Chr2	5398468	5398469	1
Deletion	Chr8	6139172	6139182	10
Deletion	Chr10	7147001	7504000	357000	53
Deletion	Chr11	8331018	8331031	13
Deletion	Chr5	14962089	14962090	1	LOC_Os05g25720
Deletion	Chr1	18088495	18088504	9
Deletion	Chr1	18430741	18430744	3	LOC_Os01g33460
Deletion	Chr1	20076536	20076538	2
Deletion	Chr5	20487498	20487499	1	LOC_Os05g34550
Deletion	Chr1	20798776	20798793	17	LOC_Os01g37240
Deletion	Chr2	22023001	22269000	246000	44
Deletion	Chr2	22690707	22690720	13
Deletion	Chr9	22705324	22707105	1781	LOC_Os09g39550
Deletion	Chr12	24452200	24452204	4
Deletion	Chr2	25045872	25045889	17
Deletion	Chr4	27686905	27686911	6
Deletion	Chr2	34475602	34475603	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	8324723	8324723	1
Insertion	Chr4	312993	312994	2
Insertion	Chr7	29200801	29200801	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	483302	5903475	2

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	733680	Chr8	4848745	LOC_Os09g02030
Translocation	Chr9	734526	Chr8	4848707	LOC_Os09g02030
Translocation	Chr9	5944712	Chr3	31777524
Translocation	Chr9	5950286	Chr3	31777482
Translocation	Chr7	9228445	Chr2	25382607	LOC_Os02g42200

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