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Mutant Information

Mutant Name	FN1290-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1290-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15661874	C-G	HOMO	INTERGENIC
SBS	Chr1	16664592	C-T	HET	INTERGENIC
SBS	Chr1	29025710	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g50530
SBS	Chr10	20300101	T-A	HOMO	INTERGENIC
SBS	Chr11	17100124	C-T	HET	UTR_5_PRIME
SBS	Chr11	21192223	T-C	HOMO	INTRON
SBS	Chr11	21889244	C-A	HET	INTERGENIC
SBS	Chr2	33452801	C-T	HET	INTERGENIC
SBS	Chr2	33664082	A-G	HET	INTRON
SBS	Chr2	4831052	T-A	HOMO	INTERGENIC
SBS	Chr3	14687614	G-T	HET	INTRON
SBS	Chr3	23552634	C-T	HOMO	INTERGENIC
SBS	Chr3	25899822	C-T	HOMO	INTERGENIC
SBS	Chr3	9189138	G-A	HET	INTERGENIC
SBS	Chr4	19212269	C-T	HOMO	INTERGENIC
SBS	Chr4	29003813	C-G	HET	INTERGENIC
SBS	Chr4	5285113	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g09840
SBS	Chr4	7095303	C-A	HOMO	INTERGENIC
SBS	Chr5	13224203	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g23190
SBS	Chr5	17391340	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g30060
SBS	Chr5	18832550	G-A	HET	INTERGENIC
SBS	Chr5	4582177	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g08400
SBS	Chr5	8143987	G-T	HET	INTERGENIC
SBS	Chr5	9499985	A-G	HET	INTERGENIC
SBS	Chr6	22074458	C-T	HET	INTRON
SBS	Chr7	28706966	T-A	HET	INTERGENIC
SBS	Chr7	8716231	A-G	HOMO	INTERGENIC
SBS	Chr9	8330241	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g14070

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	186146	186149	3
Deletion	Chr1	1845826	1845827	1
Deletion	Chr4	2479891	2479899	8
Deletion	Chr7	2777043	2777051	8
Deletion	Chr3	3781522	3781524	2
Deletion	Chr4	5424071	5424072	1
Deletion	Chr8	5571360	5571361	1
Deletion	Chr5	6525002	6525004	2
Deletion	Chr7	8921336	8921346	10
Deletion	Chr8	11885492	11902497	17005	2
Deletion	Chr3	12439499	12439504	5
Deletion	Chr2	12871678	12871694	16	LOC_Os02g21660
Deletion	Chr4	12990627	12990632	5
Deletion	Chr2	16559673	16559683	10
Deletion	Chr6	20436589	20436596	7
Deletion	Chr12	22759162	22759170	8
Deletion	Chr1	25533200	25533219	19
Deletion	Chr12	26605793	26605794	1
Deletion	Chr4	28868633	28868641	8	LOC_Os04g48390
Deletion	Chr3	30044128	30044129	1
Deletion	Chr4	33591886	33591899	13
Deletion	Chr3	35804235	35804244	9

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	12864063	12864066	4
Insertion	Chr3	12114390	12114391	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	11885497	12002366	LOC_Os08g20030
Inversion	Chr8	11902496	12002317	2

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	22357991	Chr3	22994707	LOC_Os03g41350

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