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Mutant Information

Mutant Name	FN1292-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1292-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14213141	A-C	HOMO	INTERGENIC
SBS	Chr10	4528804	A-C	HET	INTERGENIC
SBS	Chr10	4856909	G-A	HET	INTERGENIC
SBS	Chr10	5146685	T-C	HET	INTRON
SBS	Chr10	9598097	G-A	HET	INTERGENIC
SBS	Chr11	25057786	A-T	HET	INTERGENIC
SBS	Chr12	23792927	A-G	HET	INTERGENIC
SBS	Chr2	17299069	T-A	HET	INTERGENIC
SBS	Chr2	21434083	T-C	HET	INTRON
SBS	Chr2	33756061	G-A	HET	INTRON
SBS	Chr2	4760785	G-C	HET	INTERGENIC
SBS	Chr2	7389082	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g13730
SBS	Chr2	8406618	C-T	HET	UTR_3_PRIME
SBS	Chr3	11506512	C-A	HOMO	INTERGENIC
SBS	Chr3	16141215	G-T	HET	INTERGENIC
SBS	Chr3	20965897	G-A	HET	INTERGENIC
SBS	Chr3	20965898	G-A	HET	INTERGENIC
SBS	Chr3	26055888	G-A	HET	INTERGENIC
SBS	Chr4	16609268	G-A	HET	INTERGENIC
SBS	Chr4	30285354	T-A	HOMO	SPLICE_SITE_REGION
SBS	Chr4	3288061	T-G	HET	INTERGENIC
SBS	Chr5	10424378	C-T	HET	INTERGENIC
SBS	Chr5	11056362	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g19050
SBS	Chr5	12594057	A-T	HET	INTERGENIC
SBS	Chr5	26117153	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g44930
SBS	Chr5	9191649	C-T	HET	INTRON
SBS	Chr6	8182240	C-A	HET	INTRON
SBS	Chr7	20767441	T-C	HET	SPLICE_SITE_DONOR	LOC_Os07g34640
SBS	Chr8	10208467	A-C	HOMO	INTRON
SBS	Chr8	17547538	A-T	HET	INTERGENIC
SBS	Chr8	2321852	A-G	HET	INTERGENIC
SBS	Chr8	25152977	A-T	HET	INTERGENIC
SBS	Chr8	25152979	A-T	HET	INTERGENIC
SBS	Chr9	5506226	C-G	HET	INTERGENIC
SBS	Chr9	8007280	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g13690
SBS	Chr9	8007283	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g13690

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	2025734	2025746	12
Deletion	Chr1	5604842	5604843	1
Deletion	Chr11	5780756	5780765	9
Deletion	Chr6	8195327	8195328	1
Deletion	Chr12	11301115	11301116	1
Deletion	Chr6	12331986	12331987	1
Deletion	Chr6	12427001	12499000	72000	12
Deletion	Chr5	13291047	13291062	15
Deletion	Chr3	15758705	15758706	1	LOC_Os03g27470
Deletion	Chr10	19302631	19302635	4
Deletion	Chr3	19663512	19663518	6
Deletion	Chr1	19805984	19805993	9
Deletion	Chr7	20232666	20232668	2
Deletion	Chr4	21199028	21199042	14
Deletion	Chr10	21436822	21436833	11
Deletion	Chr5	21917808	21917810	2
Deletion	Chr4	26699581	26699584	3
Deletion	Chr7	26732311	26732322	11
Deletion	Chr4	32383751	32383756	5

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	2743564	2743566	3
Insertion	Chr8	27181136	27181136	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	35178476	35456568	LOC_Os02g57410
Inversion	Chr2	35178505	35456799	LOC_Os02g57410

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	3893911	Chr4	24669379	LOC_Os04g41580
Translocation	Chr7	11140853	Chr2	19691663
Translocation	Chr7	15550451	Chr5	5643368
Translocation	Chr12	25499852	Chr4	15519255	LOC_Os12g41150

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