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Mutant Information

Mutant Name	FN1301-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1301-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17359372	A-G	HET	INTERGENIC
SBS	Chr1	25104552	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g43800
SBS	Chr1	31884750	G-T	HET	INTERGENIC
SBS	Chr1	32952566	T-A	HOMO	INTERGENIC
SBS	Chr1	3763965	G-T	HET	INTERGENIC
SBS	Chr1	38253639	C-T	HET	INTERGENIC
SBS	Chr1	38450785	C-A	HET	INTERGENIC
SBS	Chr11	12982708	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g22570
SBS	Chr12	12015318	T-G	HET	INTERGENIC
SBS	Chr12	19361709	T-C	HET	INTERGENIC
SBS	Chr12	21045410	C-T	HET	INTERGENIC
SBS	Chr12	23385770	T-A	HET	INTRON
SBS	Chr12	23837333	T-C	HET	INTRON
SBS	Chr2	20586578	G-C	HOMO	INTERGENIC
SBS	Chr2	35073305	C-A	HOMO	INTERGENIC
SBS	Chr3	22533267	G-T	HET	INTERGENIC
SBS	Chr3	29742500	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g51870
SBS	Chr3	34998342	T-C	HET	INTERGENIC
SBS	Chr3	6902277	T-C	HET	START_GAINED	LOC_Os03g12840
SBS	Chr4	33503131	G-A	HET	INTRON
SBS	Chr4	7382806	C-A	HET	INTERGENIC
SBS	Chr5	11343911	G-A	HET	INTRON
SBS	Chr5	12270422	C-A	HOMO	INTERGENIC
SBS	Chr5	2449685	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g05030
SBS	Chr5	7495522	A-G	HET	INTRON
SBS	Chr6	10133888	A-T	HET	INTERGENIC
SBS	Chr6	12034450	T-C	HET	INTERGENIC
SBS	Chr6	16678869	C-T	HET	INTRON
SBS	Chr6	27331790	C-T	HET	INTERGENIC
SBS	Chr6	28573325	C-A	HET	INTERGENIC
SBS	Chr7	5907655	G-A	HET	INTERGENIC
SBS	Chr8	23456894	G-T	HET	INTERGENIC
SBS	Chr8	27603968	T-A	HET	UTR_5_PRIME
SBS	Chr9	9345783	A-G	HET	INTERGENIC

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	354361	354367	6
Deletion	Chr1	3763985	3763986	1
Deletion	Chr11	5700880	5700884	4	LOC_Os11g10460
Deletion	Chr9	5710657	5710662	5	LOC_Os09g10450
Deletion	Chr6	7109204	7109205	1
Deletion	Chr5	7202177	7202181	4
Deletion	Chr11	7213449	7213466	17
Deletion	Chr12	8660734	8660736	2
Deletion	Chr11	9919941	9919943	2
Deletion	Chr5	10839999	10840005	6
Deletion	Chr4	11793917	11793919	2
Deletion	Chr5	14149184	14149186	2
Deletion	Chr6	14713062	14714208	1146	LOC_Os06g25150
Deletion	Chr6	15256160	15256178	18
Deletion	Chr11	17370157	17370166	9
Deletion	Chr1	18025671	18025674	3
Deletion	Chr5	19287491	19287492	1
Deletion	Chr2	20192293	20192312	19
Deletion	Chr9	21041900	21041901	1
Deletion	Chr10	21240140	21240161	21
Deletion	Chr12	23326373	23326384	11	LOC_Os12g37970
Deletion	Chr8	26214860	26214861	1
Deletion	Chr12	27234724	27234728	4
Deletion	Chr8	27430237	27430252	15
Deletion	Chr3	34029957	34029959	2
Deletion	Chr2	35335537	35335541	4
Deletion	Chr3	36242148	36242166	18
Deletion	Chr1	36785108	36785116	8

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	6160503	6160506	4
Insertion	Chr10	3128263	3128263	1
Insertion	Chr11	28875095	28875096	2
Insertion	Chr2	6051807	6051807	1
Insertion	Chr9	10786503	10786506	4

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	200406	516186
Inversion	Chr5	21273209	21672082	LOC_Os05g35860
Inversion	Chr1	23208701	23247399	2

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	27401541	Chr7	15223	LOC_Os12g44170

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