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Mutant Information

Mutant Name	FN1302-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1302-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12675262	C-A	HET	INTERGENIC
SBS	Chr1	36876593	C-A	HET	INTRON
SBS	Chr1	36876594	G-A	HET	INTRON
SBS	Chr1	38245212	C-A	HET	INTERGENIC
SBS	Chr1	40622375	G-T	HET	INTERGENIC
SBS	Chr1	40622376	G-T	HET	INTERGENIC
SBS	Chr1	42467522	T-A	HET	INTRON
SBS	Chr10	20037271	A-G	HET	INTERGENIC
SBS	Chr10	5180569	G-A	HET	INTERGENIC
SBS	Chr11	12117939	T-C	HET	INTERGENIC
SBS	Chr11	20214847	C-T	HET	SYNONYMOUS_CODING
SBS	Chr11	25548546	T-C	HET	INTERGENIC
SBS	Chr11	28869484	C-A	HET	INTERGENIC
SBS	Chr11	4847798	T-A	HET	INTERGENIC
SBS	Chr12	10975700	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g18910
SBS	Chr12	11172212	C-T	HOMO	INTRON
SBS	Chr12	26960265	A-T	HET	INTERGENIC
SBS	Chr12	7498991	C-T	HOMO	INTERGENIC
SBS	Chr2	14180410	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g24480
SBS	Chr2	17777627	T-C	HOMO	INTERGENIC
SBS	Chr2	21908884	G-A	HET	INTERGENIC
SBS	Chr2	29899485	G-C	HET	UTR_3_PRIME
SBS	Chr3	14267113	G-A	HOMO	INTERGENIC
SBS	Chr3	31386319	C-G	HET	INTRON
SBS	Chr3	32615958	A-G	HET	INTRON
SBS	Chr4	12739586	G-A	HET	INTERGENIC
SBS	Chr4	17055212	G-A	HET	INTERGENIC
SBS	Chr4	19453073	C-T	HET	INTERGENIC
SBS	Chr4	27758729	T-A	HOMO	INTERGENIC
SBS	Chr4	31586250	A-C	HOMO	INTERGENIC
SBS	Chr5	8831419	G-A	HOMO	INTRON
SBS	Chr6	15037587	C-T	HET	INTRON
SBS	Chr6	15416478	A-T	HET	INTRON
SBS	Chr6	16886542	A-G	HET	INTERGENIC
SBS	Chr6	9145582	T-C	HET	INTERGENIC
SBS	Chr7	19650634	C-A	HOMO	SYNONYMOUS_CODING
SBS	Chr7	4329907	T-G	HOMO	INTERGENIC
SBS	Chr7	7861992	C-T	HOMO	INTERGENIC
SBS	Chr8	10840283	G-A	HOMO	INTERGENIC
SBS	Chr8	11854817	G-A	HOMO	INTRON
SBS	Chr8	11854819	G-A	HOMO	INTRON

Deletions: 31

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	87834	87843	9
Deletion	Chr2	616225	616226	1
Deletion	Chr12	3708152	3708156	4
Deletion	Chr8	4116792	4116793	1
Deletion	Chr2	7003428	7003438	10
Deletion	Chr7	7703086	7703092	6
Deletion	Chr1	9005356	9005357	1
Deletion	Chr6	9144161	9144167	6
Deletion	Chr9	11046285	11046288	3
Deletion	Chr8	11683001	11848000	165000	21
Deletion	Chr11	13085555	13085594	39	LOC_Os11g22750
Deletion	Chr12	14227011	14227027	16
Deletion	Chr9	14640821	14640827	6
Deletion	Chr5	14666715	14666717	2
Deletion	Chr8	15478920	15478932	12
Deletion	Chr10	15634001	15913000	279000	46
Deletion	Chr3	16287372	16287376	4
Deletion	Chr7	16432322	16432323	1
Deletion	Chr4	16780925	16780926	1
Deletion	Chr5	18532771	18535822	3051	2
Deletion	Chr1	21657453	21657455	2
Deletion	Chr4	22002254	22002260	6
Deletion	Chr5	26329720	26329721	1
Deletion	Chr1	29548537	29548568	31
Deletion	Chr1	31519143	31519153	10	LOC_Os01g54784
Deletion	Chr3	33650549	33650554	5
Deletion	Chr3	33655550	33655564	14
Deletion	Chr1	33692266	33692270	4	LOC_Os01g58290
Deletion	Chr1	33849806	33849808	2
Deletion	Chr4	35475450	35475454	4
Deletion	Chr1	36965173	36965174	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	2566850	2566861	12
Insertion	Chr1	6154084	6154087	4
Insertion	Chr11	27804546	27804547	2
Insertion	Chr2	27707087	27707087	1
Insertion	Chr8	16701441	16701442	2

No Inversion

No Translocation

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