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Mutant Information

Mutant Name	FN1304-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1304-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 43

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12245106	A-G	HET	INTRON
SBS	Chr1	12475963	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g22190
SBS	Chr1	14370429	T-C	HET	INTRON
SBS	Chr1	22511530	G-A	HOMO	INTERGENIC
SBS	Chr1	25079687	C-A	HET	INTERGENIC
SBS	Chr10	18694206	C-A	HOMO	INTERGENIC
SBS	Chr10	7369280	T-G	HET	INTERGENIC
SBS	Chr11	18115342	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g31120
SBS	Chr11	23049723	A-G	HET	INTERGENIC
SBS	Chr11	7598626	G-A	HOMO	INTRON
SBS	Chr12	21543613	T-C	HET	SYNONYMOUS_CODING
SBS	Chr12	25138079	C-T	HET	INTERGENIC
SBS	Chr12	26044535	G-A	HET	INTRON
SBS	Chr12	26121959	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g42130
SBS	Chr12	3538914	C-T	HET	INTRON
SBS	Chr2	10349583	G-A	HET	INTERGENIC
SBS	Chr2	10349584	G-A	HET	INTERGENIC
SBS	Chr2	14315557	G-A	HET	INTERGENIC
SBS	Chr2	32563866	C-T	HET	INTERGENIC
SBS	Chr2	33413874	G-T	HET	INTRON
SBS	Chr2	33674046	T-C	HET	INTRON
SBS	Chr3	15609969	G-T	HET	INTERGENIC
SBS	Chr3	16420228	C-T	HET	INTERGENIC
SBS	Chr3	19683147	G-A	HET	INTERGENIC
SBS	Chr3	19683148	C-T	HET	INTERGENIC
SBS	Chr3	25138720	T-A	HET	INTERGENIC
SBS	Chr4	25804780	A-G	HOMO	INTRON
SBS	Chr5	12267199	A-G	HET	INTERGENIC
SBS	Chr5	17707437	G-A	HET	INTRON
SBS	Chr5	18853320	G-A	HET	INTERGENIC
SBS	Chr5	25080659	G-T	HOMO	INTERGENIC
SBS	Chr5	8084806	T-A	HET	INTERGENIC
SBS	Chr5	9329780	T-A	HET	INTERGENIC
SBS	Chr5	9922401	A-G	HET	SYNONYMOUS_CODING
SBS	Chr6	5768043	T-A	HOMO	INTERGENIC
SBS	Chr7	24226156	G-A	HET	INTRON
SBS	Chr7	6647608	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g11990
SBS	Chr7	9202531	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g15840
SBS	Chr8	27943503	A-T	HET	INTRON
SBS	Chr9	19748393	A-C	HOMO	INTERGENIC
SBS	Chr9	22053183	G-A	HET	INTRON
SBS	Chr9	3974206	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g07830
SBS	Chr9	5618349	A-G	HET	INTERGENIC

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	4762314	4762315	1
Deletion	Chr8	6583162	6583172	10
Deletion	Chr8	8232264	8232265	1
Deletion	Chr11	8850708	8850719	11
Deletion	Chr6	9606881	9606890	9
Deletion	Chr12	11724728	11724737	9
Deletion	Chr4	12226281	12226286	5
Deletion	Chr10	13747941	13747942	1
Deletion	Chr11	14166906	14166914	8
Deletion	Chr2	14399506	14399507	1
Deletion	Chr3	20441487	20441489	2
Deletion	Chr4	21382192	21382198	6
Deletion	Chr4	21560652	21560654	2
Deletion	Chr9	22916077	22916080	3
Deletion	Chr2	23100932	23100937	5
Deletion	Chr2	25370263	25370266	3	LOC_Os02g42180
Deletion	Chr6	25693001	25820000	127000	25
Deletion	Chr12	26318130	26318133	3
Deletion	Chr4	26348270	26348273	3	LOC_Os04g44510
Deletion	Chr2	26987050	26987052	2
Deletion	Chr6	28286280	28286289	9

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	6704332	6704335	4
Insertion	Chr3	15159939	15159942	4
Insertion	Chr5	21243538	21243538	1
Insertion	Chr6	23438886	23438897	12	LOC_Os06g39470
Insertion	Chr9	10403603	10403604	2
Insertion	Chr9	15198129	15198132	4

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	5593998	6491167	LOC_Os09g11630
Inversion	Chr4	8091166	8094176
Inversion	Chr1	26872414	27107453	2

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	13265772	Chr1	25152179	2
Translocation	Chr12	13265774	Chr1	24684367	2
Translocation	Chr11	16996107	Chr4	3614474

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