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Mutant Information

Mutant Name	FN1307-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1307-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Low (Between 25% and 74%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15420954	G-A	HET	SYNONYMOUS_CODING
SBS	Chr10	10269288	C-T	HOMO	INTERGENIC
SBS	Chr10	12608093	T-C	HET	SYNONYMOUS_CODING
SBS	Chr10	12937337	C-A	HOMO	INTERGENIC
SBS	Chr11	18829140	C-A	HET	INTERGENIC
SBS	Chr11	23614695	C-A	HET	INTERGENIC
SBS	Chr11	24280083	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g40680
SBS	Chr12	10040960	G-A	HET	SYNONYMOUS_CODING
SBS	Chr12	13414195	T-A	HET	INTERGENIC
SBS	Chr12	15356276	T-G	HET	INTRON
SBS	Chr12	16440150	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g27880
SBS	Chr12	6601592	G-T	HET	INTERGENIC
SBS	Chr12	927296	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g02660
SBS	Chr2	12908742	A-G	HET	INTERGENIC
SBS	Chr2	14111091	T-G	HET	INTRON
SBS	Chr2	35503786	G-T	HET	INTRON
SBS	Chr3	14060000	A-T	HET	INTERGENIC
SBS	Chr3	17954274	G-T	HOMO	INTERGENIC
SBS	Chr3	26498178	C-T	HOMO	INTERGENIC
SBS	Chr3	5389463	G-A	HET	INTRON
SBS	Chr4	24429411	C-T	HET	INTERGENIC
SBS	Chr4	24549025	C-T	HET	SPLICE_SITE_DONOR	LOC_Os04g41400
SBS	Chr5	10919917	T-G	HOMO	INTRON
SBS	Chr5	16430155	A-G	HOMO	INTERGENIC
SBS	Chr5	18495449	C-A	HET	SPLICE_SITE_ACCEPTOR	LOC_Os05g31750
SBS	Chr5	18495450	T-C	HET	SPLICE_SITE_ACCEPTOR	LOC_Os05g31750
SBS	Chr5	20148451	A-G	HET	INTERGENIC
SBS	Chr6	17195466	C-T	HET	INTRON
SBS	Chr7	14518689	C-T	HOMO	INTERGENIC
SBS	Chr7	3697820	G-A	HET	INTERGENIC
SBS	Chr9	17686523	A-C	HET	INTERGENIC
SBS	Chr9	20358953	G-A	HET	UTR_3_PRIME
SBS	Chr9	2208603	T-C	HOMO	INTRON
SBS	Chr9	22597395	T-A	HET	UTR_5_PRIME

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	3906926	3906929	3
Deletion	Chr6	3964027	3964037	10	LOC_Os06g08170
Deletion	Chr12	6601371	6601382	11
Deletion	Chr7	8009443	8009454	11	LOC_Os07g14030
Deletion	Chr1	11591152	11591154	2
Deletion	Chr8	15717571	15717572	1
Deletion	Chr8	17140927	17140945	18
Deletion	Chr5	18127314	18127321	7
Deletion	Chr4	18329169	18329178	9	LOC_Os04g30670
Deletion	Chr6	22413717	22413741	24
Deletion	Chr2	26622928	26622938	10
Deletion	Chr4	26937442	26937443	1
Deletion	Chr2	29381885	29381900	15
Deletion	Chr3	34998580	34998581	1

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	17866036	17866037	2
Insertion	Chr5	16590201	16590202	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	16899666	20420913

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	7983958	Chr9	8606313	LOC_Os09g14540

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