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Mutant Information

Mutant Name	FN1313-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1313-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11770268	T-C	HOMO	INTERGENIC
SBS	Chr1	17578356	G-A	HET	SYNONYMOUS_CODING
SBS	Chr1	20865450	T-G	HET	INTERGENIC
SBS	Chr2	20685882	A-T	HET	UTR_3_PRIME
SBS	Chr3	28265334	G-A	HET	INTRON
SBS	Chr4	549292	T-A	HET	INTRON
SBS	Chr4	6637192	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g12080
SBS	Chr4	11948391	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g21200
SBS	Chr4	15110757	C-T	HET	INTERGENIC
SBS	Chr4	28552245	G-A	HET	INTERGENIC
SBS	Chr4	33613350	C-A	HET	INTERGENIC
SBS	Chr5	1401507	T-G	HET	INTRON
SBS	Chr5	23312075	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g39720
SBS	Chr6	27667190	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g45690
SBS	Chr8	3821521	C-A	HET	INTERGENIC
SBS	Chr8	3924049	C-A	HET	INTERGENIC
SBS	Chr8	6822331	C-A	HET	INTERGENIC
SBS	Chr8	10885492	C-T	HET	INTERGENIC
SBS	Chr8	20727425	G-C	HOMO	INTERGENIC
SBS	Chr9	11405008	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g18610
SBS	Chr9	17376632	C-T	HET	INTERGENIC
SBS	Chr10	10045858	C-T	HET	INTERGENIC
SBS	Chr11	20942774	A-T	HET	INTRON
SBS	Chr11	23511347	G-C	HET	INTRON
SBS	Chr12	1466905	G-A	HOMO	INTERGENIC
SBS	Chr12	14419075	G-A	HET	INTERGENIC

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	446772	446773	1
Deletion	Chr5	1307770	1307771	1
Deletion	Chr6	4327008	4327009	1
Deletion	Chr9	7875419	7875428	9
Deletion	Chr7	9258157	9258158	1
Deletion	Chr6	13129774	13129777	3
Deletion	Chr6	13261783	13261788	5	LOC_Os06g22770
Deletion	Chr5	13446273	13448337	2064	LOC_Os05g23500
Deletion	Chr3	13744073	13744074	1
Deletion	Chr8	13912246	13912247	1
Deletion	Chr8	19737998	19738028	30
Deletion	Chr9	21031436	21031439	3
Deletion	Chr6	24140359	24141834	1475	LOC_Os06g40500
Deletion	Chr2	24160105	24160115	10
Deletion	Chr7	24691830	24691840	10
Deletion	Chr6	25540212	25540213	1
Deletion	Chr3	25802457	25802471	14
Deletion	Chr2	31217717	31217741	24
Deletion	Chr1	35253802	35253819	17
Deletion	Chr1	38375181	38375183	2

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	7568561	7568562	2
Insertion	Chr1	33348704	33348706	3
Insertion	Chr2	6262118	6262118	1
Insertion	Chr4	33654286	33654286	1
Insertion	Chr6	18121138	18121147	10	LOC_Os06g31190
Insertion	Chr6	31142711	31142712	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	7618340	8001597	2
Inversion	Chr1	15174857	15529377
Inversion	Chr1	15174871	15529381
Inversion	Chr11	23071009	23510987	2
Inversion	Chr11	23081182	23510992	2

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	5818122	Chr1	16245176

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