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Mutant Information

Mutant Name	FN1317-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1317-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19001358	G-A	HET	INTERGENIC
SBS	Chr1	3390865	T-A	HET	INTERGENIC
SBS	Chr1	9885778	A-G	HET	INTERGENIC
SBS	Chr10	18068294	T-A	HET	INTERGENIC
SBS	Chr10	3651086	C-G	HOMO	INTERGENIC
SBS	Chr11	18838613	G-A	HET	INTERGENIC
SBS	Chr12	9234491	A-C	HET	INTERGENIC
SBS	Chr2	30841211	G-A	HET	INTRON
SBS	Chr3	1083006	G-A	HET	INTRON
SBS	Chr3	19932096	T-C	HET	INTERGENIC
SBS	Chr3	22477466	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g40460
SBS	Chr3	22574967	C-T	HET	INTERGENIC
SBS	Chr3	23598443	A-G	HET	INTERGENIC
SBS	Chr3	23977748	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g42990
SBS	Chr3	29931920	T-G	HOMO	INTRON
SBS	Chr3	30157618	C-T	HOMO	INTRON
SBS	Chr4	17226901	C-T	HET	INTERGENIC
SBS	Chr4	25198236	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g42600
SBS	Chr4	8842590	A-C	HET	INTERGENIC
SBS	Chr5	12804950	G-A	HET	INTERGENIC
SBS	Chr5	16474154	A-G	HET	INTERGENIC
SBS	Chr5	6870868	A-T	HET	INTERGENIC
SBS	Chr5	6870873	A-T	HET	INTERGENIC
SBS	Chr7	26844200	G-A	HOMO	INTERGENIC
SBS	Chr7	8563563	A-G	HET	SYNONYMOUS_CODING
SBS	Chr8	11281491	A-C	HET	INTERGENIC
SBS	Chr8	13170937	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g21970
SBS	Chr8	13334155	G-C	HET	SYNONYMOUS_CODING
SBS	Chr8	20411796	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g32920
SBS	Chr8	23826683	G-A	HET	INTERGENIC
SBS	Chr8	24826593	A-T	HET	INTERGENIC
SBS	Chr8	5011163	T-C	HET	INTRON
SBS	Chr8	5878831	G-T	HET	INTRON
SBS	Chr9	3997712	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g07860

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1756659	1756664	5
Deletion	Chr8	5973371	5973393	22
Deletion	Chr5	6072765	6072766	1
Deletion	Chr5	7437571	7437578	7
Deletion	Chr4	14232723	14232741	18
Deletion	Chr11	14362470	14362471	1	LOC_Os11g25210
Deletion	Chr11	17567257	17567259	2
Deletion	Chr6	17964642	17964643	1
Deletion	Chr8	18487460	18487481	21
Deletion	Chr8	20764814	20764816	2
Deletion	Chr12	22135928	22135939	11	LOC_Os12g36110
Deletion	Chr4	29886118	29886120	2
Deletion	Chr4	29967924	29967940	16	LOC_Os04g50204
Deletion	Chr1	36205374	36205375	1

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	27829340	27829340	1
Insertion	Chr11	4803269	4803270	2
Insertion	Chr2	18588040	18588050	11
Insertion	Chr5	14520416	14520417	2
Insertion	Chr5	18832874	18832875	2
Insertion	Chr6	5718480	5718481	2
Insertion	Chr8	10173562	10173563	2
Insertion	Chr9	4317876	4317877	2

No Inversion

No Translocation

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