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Mutant Information

Mutant Name	FN1320-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1320-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	31950482	G-C	HET	INTERGENIC
SBS	Chr1	32784414	A-G	HET	INTERGENIC
SBS	Chr1	37080190	G-A	HET	INTERGENIC
SBS	Chr1	37080191	G-A	HET	INTERGENIC
SBS	Chr2	15313220	A-G	HET	INTERGENIC
SBS	Chr3	1189726	C-G	HET	INTERGENIC
SBS	Chr3	3903367	G-T	HET	INTRON
SBS	Chr3	8452349	A-G	HET	INTERGENIC
SBS	Chr3	20129686	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g36290
SBS	Chr3	24739053	C-T	HET	INTERGENIC
SBS	Chr3	34352986	G-A	HOMO	INTERGENIC
SBS	Chr4	11647579	G-A	HET	INTERGENIC
SBS	Chr4	13056714	C-T	HET	INTRON
SBS	Chr4	19559000	T-A	HOMO	INTERGENIC
SBS	Chr5	17013722	T-C	HET	INTERGENIC
SBS	Chr5	25857621	A-T	HET	INTRON
SBS	Chr6	12672722	C-T	HET	INTERGENIC
SBS	Chr6	17328008	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g30070
SBS	Chr6	17652576	T-A	HOMO	INTERGENIC
SBS	Chr6	28604747	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g47170
SBS	Chr6	29420836	C-G	HOMO	INTRON
SBS	Chr7	8437178	G-T	HOMO	SYNONYMOUS_CODING
SBS	Chr7	20789898	G-A	HET	UTR_3_PRIME
SBS	Chr7	20789899	C-A	HET	UTR_3_PRIME
SBS	Chr7	27683597	A-G	HET	INTERGENIC
SBS	Chr8	3193747	G-A	HET	INTRON
SBS	Chr8	21585785	T-A	HET	INTERGENIC
SBS	Chr8	22202680	G-T	HET	INTERGENIC
SBS	Chr9	13805119	C-G	HOMO	INTRON
SBS	Chr10	1651793	C-A	HET	INTERGENIC
SBS	Chr10	2531079	G-A	HET	SYNONYMOUS_CODING
SBS	Chr10	11487417	C-T	HET	INTRON
SBS	Chr10	16054844	A-G	HET	INTERGENIC
SBS	Chr10	16607758	C-A	HET	INTERGENIC
SBS	Chr10	17566145	C-T	HOMO	UTR_5_PRIME
SBS	Chr10	18768490	G-A	HET	INTERGENIC
SBS	Chr11	16828360	C-T	HET	INTERGENIC
SBS	Chr12	22749059	A-T	HOMO	INTERGENIC

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	260909	260911	2
Deletion	Chr10	448423	448429	6
Deletion	Chr2	1863267	1863275	8	LOC_Os02g04240
Deletion	Chr10	3420841	3420848	7
Deletion	Chr2	4584707	4584708	1
Deletion	Chr2	9136631	9136741	110
Deletion	Chr8	10296877	10296880	3	LOC_Os08g16840
Deletion	Chr7	10319251	10319258	7
Deletion	Chr6	12394104	12394227	123
Deletion	Chr12	16139898	16139913	15	LOC_Os12g27420
Deletion	Chr5	16409569	16409593	24
Deletion	Chr1	17843002	17843008	6	LOC_Os01g32530
Deletion	Chr2	18069617	18069665	48	LOC_Os02g30330
Deletion	Chr9	20046395	20046400	5	LOC_Os09g33960
Deletion	Chr5	23195947	23195955	8
Deletion	Chr7	26107017	26107019	2
Deletion	Chr5	28297593	28297594	1
Deletion	Chr4	33817768	33817784	16

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr7	4780597	4780598	2
Insertion	Chr6	5232124	5232124	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	17830017	17834052	LOC_Os11g30620
Inversion	Chr6	23505507	23506059	LOC_Os06g39600
Inversion	Chr1	37159624	37162967
Inversion	Chr1	37159635	37162971

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	16156152	Chr3	25977074
Translocation	Chr8	16156163	Chr3	25988662	LOC_Os03g45970

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