Search Nipponbare

Mutant Information

Mutant Name	FN1321-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1321-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	34993098	C-A	HET	INTERGENIC
SBS	Chr1	38067111	C-T	HET	INTRON
SBS	Chr1	5078043	G-T	HET	INTERGENIC
SBS	Chr1	7870984	G-A	HET	SYNONYMOUS_CODING
SBS	Chr10	9253598	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g18210
SBS	Chr12	27465360	C-T	HET	INTRON
SBS	Chr2	14610327	G-A	HET	INTERGENIC
SBS	Chr2	25212302	G-A	HET	INTRON
SBS	Chr2	25439785	C-T	HET	INTERGENIC
SBS	Chr3	6961604	T-A	HET	INTRON
SBS	Chr4	1020326	C-T	HOMO	INTERGENIC
SBS	Chr4	26490205	C-T	HET	INTRON
SBS	Chr4	27690907	C-T	HET	UTR_5_PRIME
SBS	Chr4	3204428	C-A	HET	STOP_GAINED	LOC_Os04g06144
SBS	Chr4	33029341	G-T	HET	INTERGENIC
SBS	Chr4	34288033	T-A	HET	INTERGENIC
SBS	Chr5	8414287	C-T	HET	INTRON
SBS	Chr6	12384644	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g21430
SBS	Chr7	11916347	C-T	HET	INTERGENIC
SBS	Chr7	22499369	T-A	HET	INTERGENIC
SBS	Chr7	25839402	G-A	HET	INTERGENIC
SBS	Chr7	27293946	C-T	HET	INTERGENIC
SBS	Chr8	4661904	T-A	HOMO	INTERGENIC
SBS	Chr8	4661905	C-A	HOMO	INTERGENIC
SBS	Chr9	188362	T-A	HET	INTERGENIC
SBS	Chr9	9171405	T-G	HET	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	368761	371845	3084	2
Deletion	Chr8	4147415	4147424	9	LOC_Os08g07390
Deletion	Chr3	4416170	4416174	4
Deletion	Chr3	5418633	5418652	19
Deletion	Chr7	7243226	7243227	1
Deletion	Chr5	9205146	9205150	4	LOC_Os05g16260
Deletion	Chr3	9406199	9406214	15
Deletion	Chr6	12359868	12359874	6
Deletion	Chr4	15317646	15317651	5
Deletion	Chr9	15614044	15615548	1504	LOC_Os09g25990
Deletion	Chr8	15971525	15971559	34
Deletion	Chr9	16317449	16317453	4
Deletion	Chr5	17723802	17723810	8
Deletion	Chr5	17923961	17923964	3
Deletion	Chr1	22764508	22764509	1
Deletion	Chr3	23103911	23103925	14
Deletion	Chr1	24737156	24737157	1
Deletion	Chr2	27000962	27000966	4
Deletion	Chr1	31656001	31815000	159000	23

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	42459782	42459783	2
Insertion	Chr3	24016650	24016650	1
Insertion	Chr6	21027638	21027638	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	7666247	7666761	LOC_Os07g13360
Inversion	Chr7	7666727	8137998	LOC_Os07g14270
Inversion	Chr2	7727361	8293084	LOC_Os02g14890
Inversion	Chr7	8082472	8313984	LOC_Os07g14160
Inversion	Chr1	31937482	32063341

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	3962341	Chr1	31815439	LOC_Os03g07790
Translocation	Chr2	7727371	Chr1	17066505
Translocation	Chr9	15614040	Chr1	31655101	2
Translocation	Chr9	15614045	Chr7	21922053	LOC_Os09g25990
Translocation	Chr7	21922185	Chr1	31655100	LOC_Os01g55050
Translocation	Chr12	24237302	Chr9	15615547	2

Main menu