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Mutant Information

Mutant Name	FN1323-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1323-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Albino and Normal (26.67% Albino) TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 23

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19647861	A-C	HET	SYNONYMOUS_CODING
SBS	Chr10	2010528	T-A	HOMO	INTERGENIC
SBS	Chr10	20537528	A-G	HOMO	INTERGENIC
SBS	Chr10	2829309	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr10	6885754	A-T	HOMO	INTERGENIC
SBS	Chr11	26414082	T-C	HET	INTERGENIC
SBS	Chr11	6295651	C-T	HET	INTERGENIC
SBS	Chr2	14378321	T-A	HET	INTRON
SBS	Chr2	19449900	A-G	HOMO	INTERGENIC
SBS	Chr3	12633116	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g22050
SBS	Chr3	17158642	G-T	HOMO	INTERGENIC
SBS	Chr3	7899835	A-G	HOMO	INTRON
SBS	Chr5	15725829	T-G	HET	INTERGENIC
SBS	Chr5	16303268	A-C	HET	INTRON
SBS	Chr5	455362	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g01760
SBS	Chr7	21596208	A-G	HET	SYNONYMOUS_CODING
SBS	Chr7	21596209	G-A	HET	SYNONYMOUS_CODING
SBS	Chr7	3549824	C-T	HET	INTERGENIC
SBS	Chr7	4354598	T-C	HET	INTERGENIC
SBS	Chr8	13877747	C-G	HET	INTERGENIC
SBS	Chr8	17674829	A-T	HOMO	INTERGENIC
SBS	Chr8	19180269	C-T	HOMO	INTRON
SBS	Chr8	8774924	G-T	HOMO	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	2788303	2788323	20
Deletion	Chr1	5513804	5513805	1
Deletion	Chr2	6521178	6521179	1
Deletion	Chr5	13329147	13329158	11	LOC_Os05g23350
Deletion	Chr2	13392850	13392851	1	LOC_Os02g22420
Deletion	Chr8	14792281	14792285	4
Deletion	Chr6	15672343	15672344	1
Deletion	Chr11	17334073	17334075	2
Deletion	Chr2	17725678	17725680	2
Deletion	Chr7	20743239	20743255	16
Deletion	Chr7	21265804	21265806	2
Deletion	Chr1	21620821	21620824	3
Deletion	Chr6	24180680	24180682	2	LOC_Os06g40550
Deletion	Chr6	24498001	24546000	48000	6
Deletion	Chr6	24552001	24730000	178000	20
Deletion	Chr11	26716999	26717000	1
Deletion	Chr11	26982173	26982180	7
Deletion	Chr1	30230640	30230644	4
Deletion	Chr2	31599286	31599295	9

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	23067028	23067028	1
Insertion	Chr3	36038955	36038955	1
Insertion	Chr4	23433852	23433852	1
Insertion	Chr9	7340566	7340567	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	28668890	30625586	LOC_Os03g53380

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	2861072	Chr1	17634439	2
Translocation	Chr11	14627735	Chr1	5228969	LOC_Os01g10030

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