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Mutant Information

Mutant Name	FN1325-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1325-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 23

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14287207	C-T	HOMO	INTERGENIC
SBS	Chr1	27466256	G-A	HOMO	INTERGENIC
SBS	Chr10	4447338	A-G	HET	INTERGENIC
SBS	Chr10	5236666	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g09684
SBS	Chr10	5238184	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g09690
SBS	Chr10	7774595	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g14850
SBS	Chr12	2516431	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g05500
SBS	Chr2	34821042	C-A	HET	INTERGENIC
SBS	Chr3	32255701	A-G	HET	INTERGENIC
SBS	Chr4	26673070	A-G	HOMO	INTERGENIC
SBS	Chr4	34160877	G-T	HET	INTERGENIC
SBS	Chr5	12154310	A-G	HOMO	INTERGENIC
SBS	Chr5	19657825	A-G	HET	INTRON
SBS	Chr6	12887705	C-A	HET	INTERGENIC
SBS	Chr6	15302885	C-T	HET	INTERGENIC
SBS	Chr6	15642813	C-T	HET	INTERGENIC
SBS	Chr6	19732455	G-A	HET	INTERGENIC
SBS	Chr6	8156166	A-T	HET	INTRON
SBS	Chr6	9045894	C-T	HET	INTERGENIC
SBS	Chr7	25262617	C-T	HET	INTERGENIC
SBS	Chr7	6605344	G-A	HOMO	INTERGENIC
SBS	Chr8	9101308	A-T	HOMO	UTR_3_PRIME
SBS	Chr9	2992485	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g06360

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	123016	123021	5
Deletion	Chr11	749472	749483	11
Deletion	Chr3	3724463	3724469	6
Deletion	Chr12	7586109	7586118	9
Deletion	Chr9	10197148	10197155	7
Deletion	Chr6	12489121	12489123	2
Deletion	Chr9	12731942	12731944	2	LOC_Os09g21110
Deletion	Chr11	14619436	14619439	3	LOC_Os11g25640
Deletion	Chr7	15256097	15256098	1
Deletion	Chr5	16882628	16882629	1
Deletion	Chr12	18013281	18013285	4	LOC_Os12g30080
Deletion	Chr8	18537064	18537069	5
Deletion	Chr6	22116972	22116973	1
Deletion	Chr1	25327955	25327969	14
Deletion	Chr2	26681171	26681174	3
Deletion	Chr1	31908060	31911142	3082	LOC_Os01g55390
Deletion	Chr1	41712094	41712099	5

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	25279434	25279435	2	LOC_Os03g44830
Insertion	Chr5	5970091	5970092	2
Insertion	Chr8	4852202	4852205	4
Insertion	Chr9	7956104	7956107	4

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	7050350	7455041	2
Inversion	Chr9	11337088	11808786	LOC_Os09g19734
Inversion	Chr9	11337105	11808803	LOC_Os09g19734
Inversion	Chr3	26534869	26627296
Inversion	Chr3	26535034	26627313

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	5301361	Chr6	14553620	LOC_Os10g09800

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