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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18010296	C-T	HET	INTERGENIC
SBS	Chr1	22191320	A-G	HET	UTR_3_PRIME
SBS	Chr1	26384390	T-C	HET	INTRON
SBS	Chr1	27711203	C-T	HET	INTERGENIC
SBS	Chr2	3889117	C-A	HET	SYNONYMOUS_CODING
SBS	Chr2	8016272	T-C	HET	INTRON
SBS	Chr2	21997903	T-C	HET	INTRON
SBS	Chr2	22430237	C-G	HET	INTERGENIC
SBS	Chr2	23987729	G-A	HET	INTERGENIC
SBS	Chr2	30370446	C-T	HOMO	INTERGENIC
SBS	Chr3	16910359	C-T	HOMO	INTERGENIC
SBS	Chr3	22372794	C-T	HOMO	INTERGENIC
SBS	Chr3	32789503	T-A	HET	INTERGENIC
SBS	Chr4	9508444	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g17360
SBS	Chr4	10488747	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g18850
SBS	Chr4	16487002	C-T	HET	INTERGENIC
SBS	Chr4	18921068	C-A	HET	INTERGENIC
SBS	Chr5	26400503	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g45550
SBS	Chr5	29658990	T-C	HET	UTR_3_PRIME
SBS	Chr6	18089270	T-C	HET	INTERGENIC
SBS	Chr7	8404042	C-T	HOMO	INTERGENIC
SBS	Chr7	11408024	C-T	HET	INTRON
SBS	Chr7	15654076	A-C	HOMO	INTERGENIC
SBS	Chr7	23633793	T-A	HOMO	INTERGENIC
SBS	Chr7	23995263	T-G	HOMO	INTERGENIC
SBS	Chr7	24982855	C-A	HOMO	INTERGENIC
SBS	Chr8	3432290	G-A	HOMO	UTR_3_PRIME
SBS	Chr8	11622328	C-A	HOMO	INTERGENIC
SBS	Chr8	12134766	G-A	HOMO	SPLICE_SITE_DONOR	LOC_Os08g20220
SBS	Chr10	17516789	G-T	HOMO	INTERGENIC
SBS	Chr10	21055399	C-A	HOMO	UTR_3_PRIME
SBS	Chr11	15535648	G-A	HET	INTERGENIC
SBS	Chr11	15551173	G-A	HET	INTERGENIC
SBS	Chr12	19316547	G-T	HET	INTERGENIC
SBS	Chr12	22272343	T-G	HET	STOP_GAINED	LOC_Os12g36380

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	1758264	1767271	9007	2
Deletion	Chr9	4014541	4014566	25
Deletion	Chr4	5445368	5445388	20	LOC_Os04g10080
Deletion	Chr7	8729281	8729284	3
Deletion	Chr2	10952046	10952052	6
Deletion	Chr4	12124095	12124122	27
Deletion	Chr1	15133001	15168000	35000	5
Deletion	Chr6	15390298	15390300	2
Deletion	Chr9	15495562	15495594	32
Deletion	Chr11	15838001	16025000	187000	31
Deletion	Chr11	16083001	16118000	35000	6
Deletion	Chr7	23633787	23633789	2
Deletion	Chr3	24239070	24239071	1
Deletion	Chr1	24582505	24582512	7
Deletion	Chr4	28691246	28691257	11
Deletion	Chr3	31172001	31396000	224000	34
Deletion	Chr3	32628869	32628876	7	LOC_Os03g57220
Deletion	Chr3	34800830	34800851	21	LOC_Os03g61280
Deletion	Chr1	35331868	35331875	7

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	34064088	34064089	2
Insertion	Chr2	8412118	8412119	2
Insertion	Chr2	25361513	25361514	2
Insertion	Chr6	11657242	11657243	2
Insertion	Chr12	4624099	4624100	2
Insertion	Chr1	8886536	8886537	2
Insertion	Chr6	21421115	21421117	3
Insertion	Chr8	18164358	18164359	2
Insertion	Chr9	15067187	15067188	2
Insertion	Chr10	19133335	19133340	6	LOC_Os10g35770

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	15838126	16670070
Inversion	Chr11	16024914	16117694

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	1758268	Chr3	32923122	LOC_Os12g04180
Translocation	Chr12	1767261	Chr3	32923077	LOC_Os12g04200
Translocation	Chr11	11897948	Chr2	16427122	LOC_Os02g27740

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