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Mutant Information

Mutant Name	FN1327-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1327-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Low (Between 25% and 74%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Low (Between 25% and 74%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	39049603	G-C	HOMO	INTERGENIC
SBS	Chr10	2039964	A-C	HOMO	INTRON
SBS	Chr11	14212929	G-A	HET	INTERGENIC
SBS	Chr11	16112098	C-T	HET	INTERGENIC
SBS	Chr12	4906677	A-G	HET	INTRON
SBS	Chr12	8599564	A-G	HET	INTRON
SBS	Chr12	9699801	C-T	HET	INTERGENIC
SBS	Chr2	32359566	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g52930
SBS	Chr2	5318590	C-A	HET	INTERGENIC
SBS	Chr2	9820279	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g17140
SBS	Chr4	10122523	G-A	HET	INTERGENIC
SBS	Chr4	14564992	C-T	HET	INTERGENIC
SBS	Chr5	21445796	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g36180
SBS	Chr5	26805522	A-T	HET	INTERGENIC
SBS	Chr5	5163619	C-T	HET	INTERGENIC
SBS	Chr6	2386149	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g05300
SBS	Chr6	30530507	A-G	HET	SYNONYMOUS_CODING
SBS	Chr7	19708422	G-A	HOMO	INTERGENIC
SBS	Chr7	4917037	T-A	HET	INTRON
SBS	Chr7	5700379	C-T	HET	INTERGENIC
SBS	Chr8	12687840	C-A	HET	INTRON
SBS	Chr8	12687841	A-T	HET	INTRON
SBS	Chr8	18482938	T-A	HET	INTRON
SBS	Chr8	5537140	G-A	HET	INTRON
SBS	Chr9	10013582	A-G	HET	INTRON
SBS	Chr9	10019867	C-T	HET	INTRON
SBS	Chr9	10475684	A-G	HET	INTERGENIC
SBS	Chr9	10827665	C-T	HET	INTERGENIC
SBS	Chr9	1787702	A-C	HET	INTERGENIC
SBS	Chr9	18722414	A-T	HOMO	INTERGENIC
SBS	Chr9	5621156	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g10310
SBS	Chr9	6237020	T-C	HET	INTRON

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	1312726	1312727	1
Deletion	Chr6	2428001	2522000	94000	21
Deletion	Chr9	2896763	2896771	8	LOC_Os09g06180
Deletion	Chr7	4885546	4885547	1
Deletion	Chr12	4950405	4950625	220
Deletion	Chr7	5674830	5674884	54
Deletion	Chr10	5733338	5733405	67
Deletion	Chr11	7746358	7746392	34	LOC_Os11g13970
Deletion	Chr1	8781943	8781947	4
Deletion	Chr9	9957811	9970810	12999	3
Deletion	Chr9	10013499	10013522	23	LOC_Os09g16380
Deletion	Chr6	11319133	11319134	1
Deletion	Chr4	11552039	11552048	9
Deletion	Chr11	14295487	14295489	2
Deletion	Chr4	14632936	14632937	1
Deletion	Chr5	15021356	15021364	8
Deletion	Chr6	15720001	15791000	71000	11
Deletion	Chr6	16638001	16690000	52000	9
Deletion	Chr8	16639419	16639425	6
Deletion	Chr1	19129890	19129904	14
Deletion	Chr8	19696326	19696362	36
Deletion	Chr9	20323231	20323232	1	LOC_Os09g34870
Deletion	Chr9	20387275	20591362	204087	31
Deletion	Chr8	20539291	20539299	8
Deletion	Chr5	23207468	23207470	2
Deletion	Chr3	25160343	25160351	8
Deletion	Chr11	25430310	25430325	15
Deletion	Chr3	27009891	27009892	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	32044669	32044669	1
Insertion	Chr1	38794092	38794092	1
Insertion	Chr6	8965726	8965726	1
Insertion	Chr9	20595580	20595582	3

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	2522156	3764709	2
Inversion	Chr7	4425702	5673842	LOC_Os07g08570
Inversion	Chr7	4425717	5683075	2
Inversion	Chr3	23789971	23886516	LOC_Os03g42730
Inversion	Chr3	23810276	23886505

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	5673858	Chr1	38301839	LOC_Os01g65986
Translocation	Chr7	5683052	Chr1	38301817	2
Translocation	Chr7	11991485	Chr6	15790652	LOC_Os07g20730

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