Search Results

Mutant Information

Mutant Name	FN1330-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1330-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28293640	C-A	HET	INTERGENIC
SBS	Chr1	37183701	T-G	HOMO	UTR_3_PRIME
SBS	Chr2	3010817	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	6218892	T-C	HET	INTRON
SBS	Chr2	31969642	T-C	HOMO	UTR_3_PRIME
SBS	Chr2	35338858	T-C	HET	INTRON
SBS	Chr3	26361792	A-T	HET	INTERGENIC
SBS	Chr4	905883	C-T	HOMO	INTRON
SBS	Chr4	2180997	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g04560
SBS	Chr4	2263648	C-T	HET	INTERGENIC
SBS	Chr4	10584426	G-T	HET	INTERGENIC
SBS	Chr4	25499016	T-C	HET	INTERGENIC
SBS	Chr4	27939345	A-G	HET	UTR_5_PRIME
SBS	Chr5	1139609	A-T	HOMO	INTRON
SBS	Chr5	5512492	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g09728
SBS	Chr5	15072795	G-A	HET	INTERGENIC
SBS	Chr5	28456541	G-T	HET	INTERGENIC
SBS	Chr5	28737882	A-G	HET	UTR_5_PRIME
SBS	Chr6	4082097	T-A	HOMO	INTRON
SBS	Chr6	12200822	A-C	HOMO	INTERGENIC
SBS	Chr6	20565593	G-A	HOMO	INTERGENIC
SBS	Chr6	26405399	G-A	HET	INTERGENIC
SBS	Chr6	26985313	T-C	HET	INTERGENIC
SBS	Chr6	27857180	T-C	HET	INTERGENIC
SBS	Chr6	29433147	C-T	HET	INTERGENIC
SBS	Chr6	30792285	A-C	HET	INTERGENIC
SBS	Chr8	9429667	G-T	HET	INTERGENIC
SBS	Chr8	10519098	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr8	18272485	G-A	HET	INTRON
SBS	Chr9	14725821	T-C	HET	INTERGENIC
SBS	Chr9	18359896	G-A	HET	INTERGENIC
SBS	Chr10	2017811	G-C	HET	INTERGENIC
SBS	Chr10	7399513	T-A	HOMO	INTERGENIC
SBS	Chr10	22224807	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g41350
SBS	Chr10	22785591	T-A	HOMO	INTERGENIC
SBS	Chr11	6040511	T-A	HOMO	INTERGENIC
SBS	Chr11	8982840	A-T	HOMO	INTERGENIC
SBS	Chr11	13804634	A-G	HET	INTERGENIC
SBS	Chr11	14183016	G-A	HET	INTERGENIC
SBS	Chr11	15410638	A-G	HET	INTERGENIC
SBS	Chr12	23779575	G-A	HET	SYNONYMOUS_CODING

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	986561	986564	3
Deletion	Chr2	1047681	1047743	62	LOC_Os02g02770
Deletion	Chr9	2329521	2329523	2
Deletion	Chr11	4138501	4138511	10
Deletion	Chr7	7896513	7896521	8	LOC_Os07g13760
Deletion	Chr11	8392836	8392837	1
Deletion	Chr6	8501935	8501948	13	LOC_Os06g14990
Deletion	Chr6	8857794	8860457	2663	LOC_Os06g15640
Deletion	Chr12	10132146	10132195	49
Deletion	Chr11	10246189	10246192	3
Deletion	Chr4	11639104	11639140	36
Deletion	Chr9	12012741	12012742	1
Deletion	Chr2	14051532	14051945	413
Deletion	Chr10	17712880	17712884	4
Deletion	Chr1	18798212	18798214	2
Deletion	Chr1	18798216	18798218	2
Deletion	Chr2	19161945	19161955	10
Deletion	Chr1	21331627	21331628	1
Deletion	Chr4	24662681	24662690	9
Deletion	Chr12	25714784	25714790	6
Deletion	Chr11	27151608	27151611	3
Deletion	Chr3	29631698	29631702	4	LOC_Os03g51710
Deletion	Chr1	31756442	31756459	17

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	23798371	23798372	2
Insertion	Chr1	42960941	42960963	23
Insertion	Chr2	7763376	7763377	2
Insertion	Chr6	700093	700094	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	10042277	10774445
Inversion	Chr8	10059054	10774457

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	1494099	Chr3	32677483	LOC_Os03g57290
Translocation	Chr10	1674878	Chr3	32677089	2
Translocation	Chr12	26819090	Chr10	16769335	LOC_Os10g31940
Translocation	Chr5	28512086	Chr3	32677090	2
Translocation	Chr5	28512102	Chr3	32677514	2

Main menu