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Mutant Information

Mutant Name	FN1332-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1332-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 40

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1749011	A-C	HOMO	INTERGENIC
SBS	Chr1	20770612	T-A	HET	INTERGENIC
SBS	Chr1	21409773	G-A	HET	INTERGENIC
SBS	Chr1	29210812	C-T	HET	INTERGENIC
SBS	Chr2	2732553	A-G	HOMO	INTRON
SBS	Chr2	20255043	G-A	HOMO	INTERGENIC
SBS	Chr3	6017099	A-C	HOMO	UTR_5_PRIME
SBS	Chr3	6017100	T-C	HOMO	UTR_5_PRIME
SBS	Chr3	23738296	C-A	HET	INTERGENIC
SBS	Chr4	16253026	G-A	HOMO	INTERGENIC
SBS	Chr4	29845788	C-G	HOMO	INTERGENIC
SBS	Chr4	35472727	G-A	HET	INTERGENIC
SBS	Chr5	4955145	G-A	HOMO	INTERGENIC
SBS	Chr5	4955148	C-A	HOMO	INTERGENIC
SBS	Chr5	8010474	G-A	HOMO	INTERGENIC
SBS	Chr5	20864614	A-G	HET	INTERGENIC
SBS	Chr5	24742638	A-G	HET	INTERGENIC
SBS	Chr6	6043637	A-G	HOMO	INTRON
SBS	Chr6	8245093	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g14650
SBS	Chr7	11532391	T-C	HET	INTRON
SBS	Chr7	15996693	G-C	HET	INTERGENIC
SBS	Chr7	18226425	G-A	HET	INTRON
SBS	Chr8	6477825	T-A	HOMO	INTRON
SBS	Chr8	13005131	G-A	HOMO	INTRON
SBS	Chr8	20526737	A-G	HET	INTERGENIC
SBS	Chr8	20526738	C-T	HET	INTERGENIC
SBS	Chr8	22916444	A-G	HET	SYNONYMOUS_CODING
SBS	Chr9	9798591	C-T	HOMO	INTRON
SBS	Chr11	9197175	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g16590
SBS	Chr11	10511627	C-T	HET	INTERGENIC
SBS	Chr11	18382309	C-A	HOMO	UTR_5_PRIME
SBS	Chr12	4584035	C-T	HET	INTERGENIC
SBS	Chr12	7454834	C-T	HET	INTERGENIC
SBS	Chr12	18138256	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g30214
SBS	Chr12	19237909	C-T	HET	INTERGENIC
SBS	Chr12	19237910	A-T	HET	INTERGENIC
SBS	Chr12	19545099	C-T	HET	INTERGENIC
SBS	Chr12	21288350	C-A	HET	INTERGENIC
SBS	Chr12	22336443	C-T	HET	INTERGENIC
SBS	Chr12	26254585	T-A	HET	INTERGENIC

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	286485	286489	4
Deletion	Chr5	302451	302470	19	LOC_Os05g01510
Deletion	Chr2	1933248	1933254	6
Deletion	Chr7	2480409	2480416	7
Deletion	Chr1	6177059	6177063	4
Deletion	Chr5	8564567	8564568	1
Deletion	Chr10	9373121	9373130	9
Deletion	Chr6	11644575	11644585	10
Deletion	Chr9	12223686	12224143	457
Deletion	Chr8	15893150	15893154	4
Deletion	Chr9	16419036	16422973	3937	LOC_Os09g27010
Deletion	Chr11	19190308	19190311	3
Deletion	Chr1	20278001	20420000	142000	23
Deletion	Chr8	20527298	20527307	9
Deletion	Chr12	21338001	21424000	86000	17
Deletion	Chr9	22760640	22770003	9363	3
Deletion	Chr2	25922001	25976000	54000	9
Deletion	Chr1	25997502	25997523	21
Deletion	Chr1	34820785	34820798	13
Deletion	Chr1	38006872	38006880	8
Deletion	Chr1	38006876	38006884	8

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	26008486	26008487	2
Insertion	Chr7	4124573	4124574	2
Insertion	Chr1	18204129	18204164	36
Insertion	Chr1	23572413	23572414	2
Insertion	Chr7	11532380	11532380	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	23013760	23062570	LOC_Os11g38750

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	4153753	Chr1	7007059	LOC_Os03g08140
Translocation	Chr3	4154571	Chr1	7007056	LOC_Os03g08140
Translocation	Chr11	24269459	Chr1	23524840

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