Search Results
Mutant Information |
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Mutant Name | FN1335-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN1335-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Phenotype |
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Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 34
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
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SBS | Chr1 | 4137882 | T-A | HOMO | INTRON | |
SBS | Chr1 | 13720338 | C-A | HET | INTERGENIC | |
SBS | Chr1 | 22213372 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os01g39420 |
SBS | Chr1 | 25689096 | G-A | HET | INTERGENIC | |
SBS | Chr1 | 26716902 | C-T | HET | INTERGENIC | |
SBS | Chr2 | 6718073 | C-T | HET | INTRON | |
SBS | Chr2 | 11007286 | A-G | HOMO | INTERGENIC | |
SBS | Chr2 | 11147685 | C-T | HET | INTERGENIC | |
SBS | Chr3 | 8144477 | G-A | HET | SYNONYMOUS_CODING | |
SBS | Chr3 | 9201226 | C-T | HOMO | INTERGENIC | |
SBS | Chr3 | 19739541 | G-A | HET | INTERGENIC | |
SBS | Chr4 | 26600172 | C-T | HET | SYNONYMOUS_CODING | |
SBS | Chr4 | 30982664 | C-T | HET | INTERGENIC | |
SBS | Chr6 | 8585541 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g15150 |
SBS | Chr6 | 14418476 | G-A | HET | UTR_3_PRIME | |
SBS | Chr6 | 28961096 | A-T | HET | INTERGENIC | |
SBS | Chr6 | 29505563 | G-A | HOMO | SYNONYMOUS_CODING | |
SBS | Chr7 | 11543019 | C-T | HET | INTERGENIC | |
SBS | Chr7 | 19821210 | G-A | HET | INTERGENIC | |
SBS | Chr7 | 20897104 | G-T | HET | INTERGENIC | |
SBS | Chr8 | 969869 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g02420 |
SBS | Chr9 | 3047388 | T-G | HET | INTERGENIC | |
SBS | Chr9 | 5576186 | T-C | HET | INTERGENIC | |
SBS | Chr9 | 9954829 | T-A | HET | INTERGENIC | |
SBS | Chr9 | 13469052 | G-A | HET | INTERGENIC | |
SBS | Chr9 | 20161859 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g34150 |
SBS | Chr10 | 10050981 | C-T | HET | SYNONYMOUS_CODING | |
SBS | Chr11 | 3365538 | G-T | HOMO | INTERGENIC | |
SBS | Chr11 | 10286058 | G-A | HOMO | INTERGENIC | |
SBS | Chr12 | 8273444 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os12g14490 |
SBS | Chr12 | 13910213 | T-C | HET | INTERGENIC | |
SBS | Chr12 | 16140248 | T-A | HOMO | INTRON | |
SBS | Chr12 | 24291894 | C-T | HET | INTERGENIC | |
SBS | Chr12 | 25629205 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os12g41360 |
Deletions: 14
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
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Deletion | Chr10 | 2414001 | 2576000 | 162000 | 24 |
Deletion | Chr5 | 2496611 | 2496627 | 16 | |
Deletion | Chr12 | 6912876 | 6912877 | 1 | |
Deletion | Chr2 | 9433535 | 9433542 | 7 | |
Deletion | Chr9 | 9779719 | 9779750 | 31 | |
Deletion | Chr2 | 12462906 | 12462907 | 1 | LOC_Os02g21030 |
Deletion | Chr9 | 17711843 | 17711845 | 2 | |
Deletion | Chr9 | 19583501 | 19583517 | 16 | LOC_Os09g32840 |
Deletion | Chr6 | 23938570 | 23938589 | 19 | |
Deletion | Chr8 | 23965219 | 23970308 | 5089 | 2 |
Deletion | Chr1 | 24539470 | 24539643 | 173 | LOC_Os01g43030 |
Deletion | Chr2 | 29394536 | 29394540 | 4 | |
Deletion | Chr1 | 37334107 | 37336976 | 2869 | LOC_Os01g64310 |
Deletion | Chr1 | 37678210 | 37678223 | 13 |
Insertions: 9
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
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Insertion | Chr3 | 224478 | 224479 | 2 | |
Insertion | Chr12 | 2837270 | 2837271 | 2 | |
Insertion | Chr1 | 14483091 | 14483091 | 1 | |
Insertion | Chr2 | 18910158 | 18910175 | 18 | |
Insertion | Chr4 | 9332212 | 9332218 | 7 | LOC_Os04g17040 |
Insertion | Chr5 | 16746376 | 16746376 | 1 | |
Insertion | Chr7 | 1186731 | 1186740 | 10 | |
Insertion | Chr7 | 6369316 | 6369317 | 2 | |
Insertion | Chr11 | 23050004 | 23050005 | 2 |
Inversions: 3
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
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Inversion | Chr8 | 844366 | 1043073 | |
Inversion | Chr3 | 28577428 | 28595591 | LOC_Os03g50130 |
Inversion | Chr2 | 31676184 | 31879254 | LOC_Os02g52090 |
No Translocation