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Mutant Information

Mutant Name	FN1335-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1335-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13720338	C-A	HET	INTERGENIC
SBS	Chr1	22213372	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g39420
SBS	Chr1	25689096	G-A	HET	INTERGENIC
SBS	Chr1	26716902	C-T	HET	INTERGENIC
SBS	Chr1	4137882	T-A	HOMO	INTRON
SBS	Chr10	10050981	C-T	HET	SYNONYMOUS_CODING
SBS	Chr11	10286058	G-A	HOMO	INTERGENIC
SBS	Chr11	3365538	G-T	HOMO	INTERGENIC
SBS	Chr12	13910213	T-C	HET	INTERGENIC
SBS	Chr12	16140248	T-A	HOMO	INTRON
SBS	Chr12	24291894	C-T	HET	INTERGENIC
SBS	Chr12	25629205	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g41360
SBS	Chr12	8273444	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g14490
SBS	Chr2	11007286	A-G	HOMO	INTERGENIC
SBS	Chr2	11147685	C-T	HET	INTERGENIC
SBS	Chr2	6718073	C-T	HET	INTRON
SBS	Chr3	19739541	G-A	HET	INTERGENIC
SBS	Chr3	8144477	G-A	HET	SYNONYMOUS_CODING
SBS	Chr3	9201226	C-T	HOMO	INTERGENIC
SBS	Chr4	26600172	C-T	HET	SYNONYMOUS_CODING
SBS	Chr4	30982664	C-T	HET	INTERGENIC
SBS	Chr6	14418476	G-A	HET	UTR_3_PRIME
SBS	Chr6	28961096	A-T	HET	INTERGENIC
SBS	Chr6	29505563	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr6	8585541	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g15150
SBS	Chr7	11543019	C-T	HET	INTERGENIC
SBS	Chr7	19821210	G-A	HET	INTERGENIC
SBS	Chr7	20897104	G-T	HET	INTERGENIC
SBS	Chr8	969869	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g02420
SBS	Chr9	13469052	G-A	HET	INTERGENIC
SBS	Chr9	20161859	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g34150
SBS	Chr9	3047388	T-G	HET	INTERGENIC
SBS	Chr9	5576186	T-C	HET	INTERGENIC
SBS	Chr9	9954829	T-A	HET	INTERGENIC

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	2414001	2576000	162000	24
Deletion	Chr5	2496611	2496627	16
Deletion	Chr12	6912876	6912877	1
Deletion	Chr2	9433535	9433542	7
Deletion	Chr9	9779719	9779750	31
Deletion	Chr2	12462906	12462907	1	LOC_Os02g21030
Deletion	Chr9	17711843	17711845	2
Deletion	Chr9	19583501	19583517	16	LOC_Os09g32840
Deletion	Chr6	23938570	23938589	19
Deletion	Chr8	23965219	23970308	5089	2
Deletion	Chr1	24539470	24539643	173	LOC_Os01g43030
Deletion	Chr2	29394536	29394540	4
Deletion	Chr1	37334107	37336976	2869	LOC_Os01g64310
Deletion	Chr1	37678210	37678223	13

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	14483091	14483091	1
Insertion	Chr11	23050004	23050005	2
Insertion	Chr12	2837270	2837271	2
Insertion	Chr2	18910158	18910175	18
Insertion	Chr3	224478	224479	2
Insertion	Chr4	9332212	9332218	7	LOC_Os04g17040
Insertion	Chr5	16746376	16746376	1
Insertion	Chr7	1186731	1186740	10
Insertion	Chr7	6369316	6369317	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	844366	1043073
Inversion	Chr3	28577428	28595591	LOC_Os03g50130
Inversion	Chr2	31676184	31879254	LOC_Os02g52090

No Translocation

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