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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	31538181	T-C	HET	INTRON
SBS	Chr1	40071628	C-A	HET	STOP_GAINED	LOC_Os01g68970
SBS	Chr10	14661947	A-T	HET	INTERGENIC
SBS	Chr11	10569271	T-C	HOMO	INTERGENIC
SBS	Chr12	20185529	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g33380
SBS	Chr2	11374827	C-T	HET	INTERGENIC
SBS	Chr2	132107	G-T	HET	INTERGENIC
SBS	Chr2	15186206	G-T	HET	INTERGENIC
SBS	Chr2	26164165	T-C	HOMO	UTR_5_PRIME
SBS	Chr2	30912658	C-T	HOMO	INTERGENIC
SBS	Chr2	4831052	T-A	HET	INTERGENIC
SBS	Chr3	23552634	C-T	HOMO	INTERGENIC
SBS	Chr3	30389174	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g52980
SBS	Chr3	33203983	C-T	HOMO	INTERGENIC
SBS	Chr3	33203984	C-T	HOMO	INTERGENIC
SBS	Chr3	33203987	G-A	HOMO	INTERGENIC
SBS	Chr3	33204761	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g58280
SBS	Chr3	35364912	G-A	HET	INTRON
SBS	Chr4	30029340	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g50770
SBS	Chr5	24724013	G-C	HOMO	INTERGENIC
SBS	Chr5	3195801	A-T	HET	INTERGENIC
SBS	Chr5	4582177	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g08400
SBS	Chr5	7181415	T-A	HET	INTERGENIC
SBS	Chr6	1279638	G-A	HET	INTERGENIC
SBS	Chr6	28294518	A-T	HET	INTERGENIC
SBS	Chr7	21720266	A-G	HET	INTERGENIC
SBS	Chr7	24120893	A-C	HET	INTERGENIC
SBS	Chr7	9300138	C-T	HOMO	INTRON
SBS	Chr8	14589544	C-A	HET	INTERGENIC
SBS	Chr9	10155002	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g16540
SBS	Chr9	10274463	T-C	HET	INTERGENIC
SBS	Chr9	13068266	G-A	HOMO	INTERGENIC
SBS	Chr9	20008035	C-A	HOMO	INTERGENIC
SBS	Chr9	2517869	C-A	HET	INTERGENIC
SBS	Chr9	5836589	T-G	HET	INTERGENIC

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	1504761	1504762	1
Deletion	Chr7	2882539	2882544	5	LOC_Os07g05950
Deletion	Chr5	4243552	4243561	9	LOC_Os05g07860
Deletion	Chr5	4563070	4563071	1
Deletion	Chr5	5905596	5905597	1	LOC_Os05g10720
Deletion	Chr12	8111001	8234000	123000	16
Deletion	Chr12	8268001	8385000	117000	15
Deletion	Chr12	9694176	9695089	913	LOC_Os12g16900
Deletion	Chr7	10886323	10886329	6	LOC_Os07g18370
Deletion	Chr12	12161204	12161206	2	LOC_Os12g21640
Deletion	Chr8	17509635	17509636	1
Deletion	Chr1	18950888	18950891	3
Deletion	Chr7	20618271	20618283	12	LOC_Os07g34390
Deletion	Chr11	21914852	21914877	25
Deletion	Chr5	21953974	21953982	8
Deletion	Chr8	23501980	23501981	1
Deletion	Chr4	23505411	23700697	195286	27
Deletion	Chr7	23535446	23535464	18	LOC_Os07g39300
Deletion	Chr3	27006202	27006214	12
Deletion	Chr3	29583615	29583628	13
Deletion	Chr4	30029335	30029336	1	LOC_Os04g50770
Deletion	Chr2	30195787	30195793	6
Deletion	Chr1	31357836	31357868	32
Deletion	Chr1	36966249	36966256	7
Deletion	Chr1	37785887	37785890	3

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	17838567	17838570	4
Insertion	Chr12	20711488	20711489	2
Insertion	Chr2	19214790	19214793	4
Insertion	Chr3	16176063	16176064	2
Insertion	Chr4	21011236	21011249	14

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	20113234	21727996	LOC_Os01g36280

No Translocation

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