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Mutant Information

Mutant Name	FN1337-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1337-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13424444	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g23850
SBS	Chr1	20699972	C-T	HOMO	INTERGENIC
SBS	Chr1	31819458	C-T	HET	INTERGENIC
SBS	Chr1	6263252	C-G	HET	INTERGENIC
SBS	Chr1	6804463	G-T	HET	INTERGENIC
SBS	Chr10	12376575	C-T	HET	INTERGENIC
SBS	Chr10	20948376	G-A	HOMO	INTERGENIC
SBS	Chr11	26644664	G-T	HET	INTERGENIC
SBS	Chr11	8195759	C-A	HOMO	INTERGENIC
SBS	Chr12	15655556	T-C	HET	INTERGENIC
SBS	Chr12	20073900	G-A	HOMO	INTERGENIC
SBS	Chr2	20707974	T-A	HET	INTERGENIC
SBS	Chr2	27725443	G-A	HOMO	INTERGENIC
SBS	Chr2	30581576	T-A	HOMO	INTERGENIC
SBS	Chr2	35746567	A-T	HOMO	INTERGENIC
SBS	Chr2	8241872	A-G	HOMO	INTRON
SBS	Chr3	16136843	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	18817260	A-G	HET	INTERGENIC
SBS	Chr4	2820941	G-C	HOMO	INTRON
SBS	Chr4	3142329	A-G	HOMO	INTERGENIC
SBS	Chr5	27250746	G-A	HET	INTERGENIC
SBS	Chr6	20856018	G-T	HOMO	INTERGENIC
SBS	Chr6	3940326	G-T	HET	INTERGENIC
SBS	Chr6	8963493	C-T	HOMO	INTRON
SBS	Chr6	8963494	C-T	HOMO	INTRON
SBS	Chr7	11936937	G-A	HET	INTERGENIC
SBS	Chr7	13302681	C-T	HET	SYNONYMOUS_CODING
SBS	Chr7	29051731	G-T	HET	INTERGENIC
SBS	Chr8	1060299	T-C	HOMO	INTERGENIC
SBS	Chr8	16113494	C-T	HET	INTERGENIC
SBS	Chr8	5194750	G-A	HOMO	INTERGENIC
SBS	Chr9	13296669	C-G	HET	SYNONYMOUS_CODING
SBS	Chr9	1375062	T-A	HET	INTERGENIC
SBS	Chr9	4481324	A-T	HET	INTRON

Deletions: 34

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	146060	146097	37
Deletion	Chr10	1344059	1344078	19
Deletion	Chr6	1659705	1659713	8
Deletion	Chr9	1836377	1836378	1
Deletion	Chr4	4449928	4449931	3
Deletion	Chr3	4850778	4850781	3	LOC_Os03g09280
Deletion	Chr9	5084012	5084013	1
Deletion	Chr5	6313160	6313165	5
Deletion	Chr1	7245002	7245007	5	LOC_Os01g13024
Deletion	Chr12	8110932	8110938	6
Deletion	Chr11	8369869	8369871	2
Deletion	Chr11	9036421	9037518	1097	LOC_Os11g16370
Deletion	Chr9	9059114	9059132	18
Deletion	Chr3	10622085	10622086	1	LOC_Os03g18970
Deletion	Chr10	10698029	10698043	14
Deletion	Chr4	10740446	10740458	12
Deletion	Chr1	10976719	10976730	11
Deletion	Chr9	14527508	14541126	13618	2
Deletion	Chr11	14992007	14992008	1
Deletion	Chr9	16740897	16740905	8
Deletion	Chr11	16781983	16781999	16	LOC_Os11g29000
Deletion	Chr3	20893927	20893929	2
Deletion	Chr2	20944258	20944268	10
Deletion	Chr6	21416308	21416309	1
Deletion	Chr3	22122650	22122651	1
Deletion	Chr7	22319895	22319897	2
Deletion	Chr3	24679919	24679939	20
Deletion	Chr3	24679921	24679941	20
Deletion	Chr2	29001806	29001817	11
Deletion	Chr1	29656421	29656426	5
Deletion	Chr1	31347551	31347554	3
Deletion	Chr3	32977514	32977515	1
Deletion	Chr4	34690308	34690423	115
Deletion	Chr2	35474721	35477400	2679

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	31413997	31413997	1
Insertion	Chr1	38580862	38580862	1
Insertion	Chr10	2585702	2585704	3
Insertion	Chr12	20073885	20073890	6
Insertion	Chr2	33030365	33030365	1
Insertion	Chr3	14225598	14225599	2
Insertion	Chr6	16094412	16094417	6

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	13545546	13551459
Inversion	Chr9	13545572	13551463
Inversion	Chr9	17343140	17614700	LOC_Os09g28950
Inversion	Chr7	19462158	23001384	LOC_Os07g38290
Inversion	Chr7	23001386	24032228	LOC_Os07g38290

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	9036443	Chr3	29223375	LOC_Os11g16370
Translocation	Chr11	9037519	Chr3	29223369	LOC_Os11g16370
Translocation	Chr4	15896402	Chr1	9105546
Translocation	Chr9	16416198	Chr2	2673915

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