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Mutant Information

Mutant Name	FN1345-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1345-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6882925	G-A	HET	INTERGENIC
SBS	Chr10	7895494	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g15079
SBS	Chr11	6413329	T-C	HET	INTERGENIC
SBS	Chr12	15613360	A-G	HOMO	SYNONYMOUS_CODING
SBS	Chr2	23144572	G-T	HOMO	INTERGENIC
SBS	Chr2	23186257	C-T	HOMO	INTRON
SBS	Chr2	28040208	G-A	HOMO	INTERGENIC
SBS	Chr2	33236351	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g54210
SBS	Chr2	34429148	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g56270
SBS	Chr2	34633788	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g56540
SBS	Chr2	8624779	G-T	HET	INTERGENIC
SBS	Chr2	8678152	A-T	HET	INTERGENIC
SBS	Chr2	9111796	T-A	HET	INTERGENIC
SBS	Chr3	19075191	C-A	HET	INTRON
SBS	Chr3	19075192	T-A	HET	INTRON
SBS	Chr3	32333342	C-T	HOMO	INTRON
SBS	Chr3	35753690	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr4	17667347	A-T	HET	INTERGENIC
SBS	Chr4	19494658	A-G	HET	SYNONYMOUS_CODING
SBS	Chr4	21545811	G-A	HET	INTERGENIC
SBS	Chr4	31710289	T-A	HOMO	INTERGENIC
SBS	Chr5	17131250	A-T	HET	INTERGENIC
SBS	Chr5	19590963	G-C	HET	INTERGENIC
SBS	Chr6	12858137	T-A	HOMO	INTERGENIC
SBS	Chr6	28922639	A-G	HOMO	UTR_3_PRIME
SBS	Chr8	16082487	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g26390
SBS	Chr8	17405004	C-T	HOMO	INTERGENIC
SBS	Chr8	23546327	T-G	HET	INTRON
SBS	Chr8	24053416	G-T	HET	INTERGENIC
SBS	Chr8	25612133	A-C	HET	INTRON
SBS	Chr8	25612134	G-C	HET	INTRON
SBS	Chr8	8563740	C-T	HET	SYNONYMOUS_CODING
SBS	Chr9	19759792	G-C	HOMO	INTERGENIC
SBS	Chr9	20826765	T-A	HET	INTERGENIC
SBS	Chr9	9586608	C-T	HET	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	427186	427198	12
Deletion	Chr2	1217830	1217842	12	LOC_Os02g03070
Deletion	Chr10	2233534	2233565	31
Deletion	Chr8	2242503	2242514	11
Deletion	Chr1	3526557	3526564	7
Deletion	Chr11	6357276	6357315	39
Deletion	Chr11	6449315	6449327	12	LOC_Os11g11580
Deletion	Chr2	8203583	8203596	13
Deletion	Chr8	8334043	8334045	2
Deletion	Chr11	8616174	8616176	2
Deletion	Chr3	8812919	8812925	6
Deletion	Chr2	10888892	10888909	17
Deletion	Chr9	14964193	14964222	29
Deletion	Chr2	18547807	18547808	1
Deletion	Chr1	18620683	18620692	9
Deletion	Chr3	20264621	20264622	1
Deletion	Chr12	20827807	20827829	22
Deletion	Chr7	27438459	27438498	39	LOC_Os07g45970
Deletion	Chr6	28910288	28910291	3	LOC_Os06g47770

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	22007577	22007577	1
Insertion	Chr6	9031431	9031431	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	12958001	13388599	2
Inversion	Chr9	13234119	13307586	2

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	6153632	Chr2	34427745
Translocation	Chr11	11009197	Chr10	2078898	LOC_Os10g04400

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