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Mutant Information

Mutant Name	FN1351-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1351-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 25

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21365243	C-T	HET	SYNONYMOUS_CODING
SBS	Chr1	35678676	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g61660
SBS	Chr1	37220728	C-T	HET	INTERGENIC
SBS	Chr1	42029536	C-G	HET	INTERGENIC
SBS	Chr11	8538279	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g15150
SBS	Chr2	8084369	C-T	HET	INTERGENIC
SBS	Chr3	14810122	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g25890
SBS	Chr3	21345168	T-C	HET	INTRON
SBS	Chr3	28856301	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g50540
SBS	Chr3	33862802	A-G	HET	INTERGENIC
SBS	Chr4	15292762	C-A	HET	SYNONYMOUS_CODING
SBS	Chr4	24893857	T-G	HOMO	INTERGENIC
SBS	Chr4	6395329	C-A	HET	INTERGENIC
SBS	Chr5	10813026	G-A	HOMO	INTERGENIC
SBS	Chr5	14176425	G-A	HOMO	INTRON
SBS	Chr5	25193195	G-A	HET	INTERGENIC
SBS	Chr5	29408656	C-T	HET	INTERGENIC
SBS	Chr5	3992876	A-C	HET	INTERGENIC
SBS	Chr5	8172625	T-C	HET	INTERGENIC
SBS	Chr6	14860784	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g25370
SBS	Chr6	19476895	A-T	HET	INTERGENIC
SBS	Chr7	10135523	C-G	HET	INTRON
SBS	Chr7	3950225	A-G	HET	INTERGENIC
SBS	Chr9	15184435	C-T	HET	INTERGENIC
SBS	Chr9	15916815	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g26350

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	757557	757558	1	LOC_Os04g02200
Deletion	Chr12	1987873	1987881	8	LOC_Os12g04690
Deletion	Chr8	7748358	7748365	7
Deletion	Chr3	8551001	8590000	39000	5
Deletion	Chr5	8611200	8611214	14
Deletion	Chr4	9301565	9301572	7
Deletion	Chr6	9594207	9594218	11
Deletion	Chr9	10467463	10467479	16
Deletion	Chr1	10921126	10921135	9
Deletion	Chr3	11698882	11698884	2
Deletion	Chr3	11987450	11987539	89
Deletion	Chr3	15504423	15504425	2
Deletion	Chr1	22123496	22123498	2
Deletion	Chr3	22185115	22185125	10
Deletion	Chr5	24326781	24326782	1	LOC_Os05g41550
Deletion	Chr6	25327050	25327052	2
Deletion	Chr5	25728001	25757000	29000	5
Deletion	Chr3	25854486	25854489	3
Deletion	Chr2	27308511	27308516	5
Deletion	Chr7	27489369	27489370	1	LOC_Os07g46060
Deletion	Chr1	28339587	28339588	1	LOC_Os01g49300
Deletion	Chr5	28597820	28597822	2	LOC_Os05g49830

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr8	156212	156212	1
Insertion	Chr8	25412077	25412078	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	26817162	27356314	LOC_Os04g46180
Inversion	Chr4	26817214	27356323	LOC_Os04g46180

No Translocation

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