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Mutant Information

Mutant Name	FN1353-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1353-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6022572	T-A	HET	INTERGENIC
SBS	Chr1	28333812	G-A	HET	INTERGENIC
SBS	Chr1	28587089	A-C	HET	INTERGENIC
SBS	Chr1	35310851	A-T	HET	INTRON
SBS	Chr1	37805859	G-A	HET	UTR_3_PRIME
SBS	Chr2	17463805	T-C	HOMO	INTERGENIC
SBS	Chr2	24509541	C-A	HET	INTERGENIC
SBS	Chr2	31182767	T-A	HET	INTERGENIC
SBS	Chr3	2513243	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g05180
SBS	Chr4	4824385	A-G	HET	INTERGENIC
SBS	Chr4	18498928	T-C	HET	INTERGENIC
SBS	Chr5	1890482	G-T	HET	SYNONYMOUS_CODING
SBS	Chr5	13411939	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g23450
SBS	Chr5	18414876	G-A	HOMO	INTERGENIC
SBS	Chr6	20899722	G-T	HET	INTRON
SBS	Chr6	20899723	T-A	HET	INTRON
SBS	Chr7	13489887	A-G	HOMO	INTRON
SBS	Chr7	28706966	T-A	HOMO	INTERGENIC
SBS	Chr8	6884986	T-A	HET	INTERGENIC
SBS	Chr8	22152585	A-G	HET	INTERGENIC
SBS	Chr8	26920264	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g42590
SBS	Chr8	27502596	G-A	HET	INTRON
SBS	Chr8	27502597	C-A	HET	INTRON
SBS	Chr10	3825398	A-G	HOMO	INTERGENIC
SBS	Chr10	7020236	G-C	HOMO	INTRON
SBS	Chr10	7427861	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g13690
SBS	Chr10	15938047	A-T	HET	INTERGENIC
SBS	Chr12	321715	T-A	HET	INTRON
SBS	Chr12	17382407	A-G	HOMO	INTERGENIC

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	7069545	7069554	9	LOC_Os03g13080
Deletion	Chr7	9102974	9102975	1
Deletion	Chr11	9631527	9631534	7	LOC_Os11g17290
Deletion	Chr1	10098199	10098202	3
Deletion	Chr7	12876589	12876678	89
Deletion	Chr1	14062219	14062223	4
Deletion	Chr1	17549164	17549169	5	LOC_Os01g32060
Deletion	Chr10	17758932	17758949	17	LOC_Os10g33680
Deletion	Chr3	18132453	18132459	6
Deletion	Chr5	18786033	18786034	1
Deletion	Chr4	21309345	21309346	1
Deletion	Chr4	21607001	21650000	43000	5
Deletion	Chr5	21649809	21649823	14
Deletion	Chr4	25368057	25368063	6
Deletion	Chr7	27249751	27250676	925
Deletion	Chr2	27251284	27251285	1	LOC_Os02g44990
Deletion	Chr5	27745913	27745924	11
Deletion	Chr6	27818105	27818137	32
Deletion	Chr2	33032990	33032991	1
Deletion	Chr1	34915453	34915466	13

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr9	18026603	18026604	2
Insertion	Chr3	23126868	23126871	4
Insertion	Chr1	5567936	5567936	1
Insertion	Chr4	19260066	19260066	1
Insertion	Chr7	11008823	11008832	10

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	6195232	6397634
Inversion	Chr2	10848055	11024799	LOC_Os02g18600
Inversion	Chr2	10848073	11024833	LOC_Os02g18600

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	17590469	Chr1	7608800
Translocation	Chr9	17655671	Chr1	6213493

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