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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	33942755	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g58710
SBS	Chr1	6083720	C-T	HET	INTERGENIC
SBS	Chr10	12213495	G-A	HET	INTERGENIC
SBS	Chr10	3552546	T-C	HET	SYNONYMOUS_CODING
SBS	Chr10	936539	T-C	HET	INTERGENIC
SBS	Chr11	11177215	T-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g19430
SBS	Chr11	1467932	G-A	HET	INTERGENIC
SBS	Chr11	16450642	C-T	HET	INTERGENIC
SBS	Chr11	8940005	G-C	HET	INTRON
SBS	Chr11	9489738	G-T	HET	INTERGENIC
SBS	Chr12	1357263	G-A	HET	INTERGENIC
SBS	Chr12	16523856	A-T	HET	INTERGENIC
SBS	Chr12	25907397	T-A	HET	UTR_5_PRIME
SBS	Chr12	908036	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g02620
SBS	Chr12	9957165	G-A	HOMO	INTERGENIC
SBS	Chr2	14047343	G-A	HET	INTERGENIC
SBS	Chr2	17447746	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	20905063	A-T	HET	INTRON
SBS	Chr2	34566539	A-T	HET	INTERGENIC
SBS	Chr2	9343768	A-G	HET	INTERGENIC
SBS	Chr3	23234876	A-G	HET	SYNONYMOUS_CODING
SBS	Chr3	6487413	G-A	HET	INTRON
SBS	Chr4	21432993	T-A	HET	INTRON
SBS	Chr4	35413579	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g59540
SBS	Chr5	16266780	G-T	HET	INTERGENIC
SBS	Chr5	25818940	G-A	HET	SYNONYMOUS_CODING
SBS	Chr5	4198936	A-T	HET	INTRON
SBS	Chr5	8010345	T-A	HET	INTERGENIC
SBS	Chr6	25502553	C-T	HET	INTERGENIC
SBS	Chr6	8511332	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g15020
SBS	Chr7	17505771	T-C	HOMO	INTRON
SBS	Chr8	12846378	T-G	HET	INTERGENIC
SBS	Chr8	21353329	G-A	HET	UTR_3_PRIME
SBS	Chr9	6495531	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g11630

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	2791609	2791617	8
Deletion	Chr12	4813514	4813520	6
Deletion	Chr11	8590837	8590838	1	LOC_Os11g15220
Deletion	Chr7	9425931	9425933	2
Deletion	Chr5	9708262	9708263	1	LOC_Os05g17010
Deletion	Chr10	11176687	11176713	26	LOC_Os10g21784
Deletion	Chr5	11682824	11682827	3
Deletion	Chr6	11722094	11722096	2
Deletion	Chr2	14745077	14745097	20
Deletion	Chr7	15280001	15468000	188000	25
Deletion	Chr9	17389897	17389903	6
Deletion	Chr2	17444360	17444362	2
Deletion	Chr10	17833880	17833881	1
Deletion	Chr2	20810914	20810915	1
Deletion	Chr1	22338833	22338840	7	LOC_Os01g39600
Deletion	Chr9	22440522	22440528	6
Deletion	Chr4	24064704	24064711	7
Deletion	Chr6	26230836	26230837	1
Deletion	Chr1	27436170	27436171	1
Deletion	Chr4	28905878	28905954	76
Deletion	Chr1	29017075	29017077	2
Deletion	Chr5	29714518	29714519	1
Deletion	Chr4	34035001	34449000	414000	75

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	12353499	12353502	4
Insertion	Chr5	28034317	28034317	1
Insertion	Chr6	19331820	19331820	1
Insertion	Chr6	30011258	30011258	1
Insertion	Chr8	10678210	10678211	2
Insertion	Chr8	16701441	16701442	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	16181067	16529392	2

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	14418919	Chr5	7756314	LOC_Os08g23810
Translocation	Chr9	20149350	Chr8	14418941	2
Translocation	Chr9	20150467	Chr5	7787136	LOC_Os09g34130

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