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Mutant Information |
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Mutant Name | FN1357-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN1357-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Phenotype |
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Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 26
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
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SBS | Chr1 | 2164734 | G-C | HET | INTERGENIC | |
SBS | Chr1 | 11314916 | C-T | HET | INTERGENIC | |
SBS | Chr1 | 12402015 | A-T | HET | INTERGENIC | |
SBS | Chr1 | 24027809 | C-T | HET | INTERGENIC | |
SBS | Chr1 | 36912986 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os01g63640 |
SBS | Chr2 | 27770706 | A-G | HET | UTR_3_PRIME | |
SBS | Chr3 | 5200049 | T-A | HET | INTERGENIC | |
SBS | Chr3 | 13343920 | A-T | HET | INTRON | |
SBS | Chr3 | 33127137 | C-A | HET | INTERGENIC | |
SBS | Chr3 | 35032152 | A-G | HET | INTERGENIC | |
SBS | Chr4 | 4589580 | A-T | HET | INTERGENIC | |
SBS | Chr4 | 34208238 | T-C | HOMO | INTERGENIC | |
SBS | Chr6 | 25401729 | C-T | HET | INTERGENIC | |
SBS | Chr6 | 25401730 | A-G | HET | INTERGENIC | |
SBS | Chr7 | 8056615 | T-A | HET | INTERGENIC | |
SBS | Chr7 | 26048745 | G-A | HET | INTERGENIC | |
SBS | Chr9 | 695631 | A-G | HET | INTERGENIC | |
SBS | Chr9 | 13635244 | A-T | HET | INTRON | |
SBS | Chr9 | 13829538 | G-A | HET | INTERGENIC | |
SBS | Chr9 | 22794953 | T-A | HET | UTR_5_PRIME | |
SBS | Chr10 | 10477148 | T-C | HOMO | INTERGENIC | |
SBS | Chr11 | 16789960 | T-A | HET | INTERGENIC | |
SBS | Chr11 | 21752135 | T-A | HET | INTERGENIC | |
SBS | Chr11 | 26449706 | T-G | HET | INTERGENIC | |
SBS | Chr12 | 2103654 | C-T | HET | INTERGENIC | |
SBS | Chr12 | 4611438 | T-A | HET | INTERGENIC |
Deletions: 14
Insertions: 2
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
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Insertion | Chr3 | 2228937 | 2228937 | 1 | |
Insertion | Chr10 | 9352156 | 9352157 | 2 |
Inversions: 5
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr1 | 3846701 | 4801625 | 2 |
Inversion | Chr4 | 4569524 | 4780947 | 2 |
Inversion | Chr7 | 27619169 | 27678868 | LOC_Os07g46380 |
Inversion | Chr7 | 27619181 | 27678868 | LOC_Os07g46380 |
Inversion | Chr2 | 30205048 | 30218003 |
Translocations: 3
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr11 | 11263788 | Chr1 | 3846689 | LOC_Os01g07960 |
Translocation | Chr11 | 11264627 | Chr1 | 4801578 | LOC_Os01g09430 |
Translocation | Chr7 | 23842299 | Chr1 | 3093105 |