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Mutant Information

Mutant Name	FN1357-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1357-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Albino and Normal (26.67% Albino) TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Low (Between 25% and 74%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11314916	C-T	HET	INTERGENIC
SBS	Chr1	12402015	A-T	HET	INTERGENIC
SBS	Chr1	2164734	G-C	HET	INTERGENIC
SBS	Chr1	24027809	C-T	HET	INTERGENIC
SBS	Chr1	36912986	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g63640
SBS	Chr10	10477148	T-C	HOMO	INTERGENIC
SBS	Chr11	16789960	T-A	HET	INTERGENIC
SBS	Chr11	21752135	T-A	HET	INTERGENIC
SBS	Chr11	26449706	T-G	HET	INTERGENIC
SBS	Chr12	2103654	C-T	HET	INTERGENIC
SBS	Chr12	4611438	T-A	HET	INTERGENIC
SBS	Chr2	27770706	A-G	HET	UTR_3_PRIME
SBS	Chr3	13343920	A-T	HET	INTRON
SBS	Chr3	33127137	C-A	HET	INTERGENIC
SBS	Chr3	35032152	A-G	HET	INTERGENIC
SBS	Chr3	5200049	T-A	HET	INTERGENIC
SBS	Chr4	34208238	T-C	HOMO	INTERGENIC
SBS	Chr4	4589580	A-T	HET	INTERGENIC
SBS	Chr6	25401729	C-T	HET	INTERGENIC
SBS	Chr6	25401730	A-G	HET	INTERGENIC
SBS	Chr7	26048745	G-A	HET	INTERGENIC
SBS	Chr7	8056615	T-A	HET	INTERGENIC
SBS	Chr9	13635244	A-T	HET	INTRON
SBS	Chr9	13829538	G-A	HET	INTERGENIC
SBS	Chr9	22794953	T-A	HET	UTR_5_PRIME
SBS	Chr9	695631	A-G	HET	INTERGENIC

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	7659422	7659429	7
Deletion	Chr11	8240844	8240854	10
Deletion	Chr1	10640528	10640529	1
Deletion	Chr1	11322001	11426000	104000	17
Deletion	Chr1	11649128	11649145	17
Deletion	Chr1	13362275	13362279	4
Deletion	Chr7	17229522	17229524	2
Deletion	Chr8	19030252	19030253	1
Deletion	Chr2	19854889	19854906	17
Deletion	Chr6	20135915	20135916	1
Deletion	Chr7	21920338	21920357	19
Deletion	Chr7	25527165	25527176	11
Deletion	Chr4	27033240	27033258	18
Deletion	Chr4	34021490	34021499	9

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	9352156	9352157	2
Insertion	Chr3	2228937	2228937	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	3846701	4801625	2
Inversion	Chr4	4569524	4780947	2
Inversion	Chr7	27619169	27678868	LOC_Os07g46380
Inversion	Chr7	27619181	27678868	LOC_Os07g46380
Inversion	Chr2	30205048	30218003

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	11263788	Chr1	3846689	LOC_Os01g07960
Translocation	Chr11	11264627	Chr1	4801578	LOC_Os01g09430
Translocation	Chr7	23842299	Chr1	3093105

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