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Mutant Information

Mutant Name	FN1358-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1358-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16128228	G-A	HOMO	INTERGENIC
SBS	Chr1	16415826	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g29280
SBS	Chr1	27832972	C-T	HOMO	INTERGENIC
SBS	Chr1	35133823	G-A	HET	INTRON
SBS	Chr1	35934935	C-T	HET	INTERGENIC
SBS	Chr11	17162502	G-A	HOMO	INTERGENIC
SBS	Chr11	22328515	G-A	HET	INTERGENIC
SBS	Chr11	22426672	A-C	HET	INTERGENIC
SBS	Chr12	18395910	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g30630
SBS	Chr12	18395912	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr12	22471676	T-A	HOMO	INTERGENIC
SBS	Chr2	15794830	C-T	HET	INTERGENIC
SBS	Chr2	23567489	T-A	HET	INTERGENIC
SBS	Chr2	26164165	T-C	HET	UTR_5_PRIME
SBS	Chr2	30059508	C-T	HET	INTERGENIC
SBS	Chr2	393225	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g01710
SBS	Chr3	14498593	A-C	HET	INTERGENIC
SBS	Chr3	23552634	C-T	HET	INTERGENIC
SBS	Chr4	13627407	C-T	HET	INTERGENIC
SBS	Chr5	20519672	T-C	HOMO	INTERGENIC
SBS	Chr5	24724013	G-C	HET	INTERGENIC
SBS	Chr5	4582177	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g08400
SBS	Chr6	1058053	C-A	HOMO	INTRON
SBS	Chr6	14513067	A-C	HET	INTERGENIC
SBS	Chr6	15793288	C-T	HET	INTERGENIC
SBS	Chr6	28399553	A-G	HET	INTERGENIC
SBS	Chr6	5702720	T-C	HET	INTRON
SBS	Chr6	5716152	A-G	HET	INTERGENIC
SBS	Chr7	13931308	T-C	HOMO	INTRON
SBS	Chr9	20008035	C-A	HOMO	INTERGENIC

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	263371	263373	2
Deletion	Chr7	757519	757520	1
Deletion	Chr6	1022970	1023001	31
Deletion	Chr11	2099177	2099183	6
Deletion	Chr6	2344114	2344115	1
Deletion	Chr6	3030166	3030173	7
Deletion	Chr1	5852841	5852842	1
Deletion	Chr3	8193573	8193580	7	LOC_Os03g15010
Deletion	Chr12	9069876	9069890	14
Deletion	Chr10	9713150	9713153	3
Deletion	Chr2	10197302	10197307	5
Deletion	Chr10	10599120	10599125	5
Deletion	Chr7	10972017	10972019	2
Deletion	Chr5	13961581	13961587	6
Deletion	Chr3	18808367	18808377	10
Deletion	Chr6	21401799	21401819	20
Deletion	Chr2	23557841	23557866	25
Deletion	Chr8	23872596	23872601	5	LOC_Os08g37700
Deletion	Chr8	24054639	24054650	11
Deletion	Chr8	26023977	26024001	24
Deletion	Chr11	26302901	26302902	1
Deletion	Chr8	28127507	28127520	13
Deletion	Chr3	29384743	29384745	2
Deletion	Chr3	29620940	29620941	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	1705886	1705887	2
Insertion	Chr3	32775225	32775227	3
Insertion	Chr7	1186731	1186740	10
Insertion	Chr7	26822085	26822086	2
Insertion	Chr9	15067187	15067188	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	16101764	16107552	LOC_Os09g26580
Inversion	Chr9	16101779	16107548	LOC_Os09g26580
Inversion	Chr8	22708344	22781481

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	11877870	Chr1	36025161	LOC_Os05g20270
Translocation	Chr5	11879119	Chr1	36025157

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