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Mutant Information

Mutant Name	FN1363-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1363-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18807870	G-A	HET	INTRON
SBS	Chr1	26418162	G-T	HOMO	INTERGENIC
SBS	Chr2	18699763	C-T	HET	INTERGENIC
SBS	Chr2	21777484	A-T	HOMO	INTERGENIC
SBS	Chr2	25380231	C-T	HOMO	INTRON
SBS	Chr2	27570091	C-A	HET	INTERGENIC
SBS	Chr3	16622103	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	35302567	C-T	HET	INTERGENIC
SBS	Chr4	6746436	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g12230
SBS	Chr5	3736958	C-G	HET	INTERGENIC
SBS	Chr5	21584408	G-C	HET	INTERGENIC
SBS	Chr6	406659	G-A	HET	INTRON
SBS	Chr6	4202179	A-G	HET	INTRON
SBS	Chr6	14892632	C-G	HOMO	INTERGENIC
SBS	Chr7	2650189	T-A	HET	INTERGENIC
SBS	Chr7	28586049	T-G	HET	INTRON
SBS	Chr8	2398916	T-A	HET	INTERGENIC
SBS	Chr8	11393953	A-G	HET	INTERGENIC
SBS	Chr8	12618391	G-A	HET	INTRON
SBS	Chr8	27746761	C-T	HET	INTERGENIC
SBS	Chr9	6901690	A-T	HET	INTERGENIC
SBS	Chr9	14945715	C-T	HOMO	INTERGENIC
SBS	Chr9	16167597	T-A	HOMO	INTERGENIC
SBS	Chr10	680632	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g02080
SBS	Chr10	4297411	G-A	HET	INTERGENIC
SBS	Chr11	8522325	C-T	HET	INTERGENIC
SBS	Chr11	10416271	T-C	HET	INTERGENIC
SBS	Chr11	12689574	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g22100
SBS	Chr11	16973509	G-A	HET	INTRON
SBS	Chr12	1063972	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g02900
SBS	Chr12	8721860	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g15290
SBS	Chr12	10273687	G-T	HET	INTERGENIC
SBS	Chr12	10273688	C-T	HET	INTERGENIC
SBS	Chr12	12328796	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g21890

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	44819	44820	1
Deletion	Chr3	326087	326098	11
Deletion	Chr1	1450632	1450637	5
Deletion	Chr12	4060413	4060414	1
Deletion	Chr7	4713679	4713685	6
Deletion	Chr8	5680495	5680498	3
Deletion	Chr7	6188648	6188649	1
Deletion	Chr5	10642730	10642738	8
Deletion	Chr12	12829128	12829153	25	LOC_Os12g22740
Deletion	Chr6	14841969	14841970	1	LOC_Os06g25340
Deletion	Chr1	14902200	14902201	1
Deletion	Chr11	16981591	16981620	29
Deletion	Chr8	19441395	19441396	1	LOC_Os08g31430
Deletion	Chr6	19875542	19977309	101767	19
Deletion	Chr10	20191874	20191875	1
Deletion	Chr4	21370542	21370549	7	LOC_Os04g35160
Deletion	Chr11	21605899	21605911	12
Deletion	Chr1	23934596	23934606	10
Deletion	Chr5	24426044	24426061	17
Deletion	Chr6	28273019	28273027	8
Deletion	Chr4	29916843	29916862	19	LOC_Os04g50160
Deletion	Chr1	37434690	37434696	6

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr3	24760679	24760680	2
Insertion	Chr1	387120	387120	1
Insertion	Chr3	12114390	12114391	2
Insertion	Chr4	34349056	34349082	27
Insertion	Chr7	25221115	25221116	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	27021465	27176319	LOC_Os11g44900

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	610774	Chr4	4507458	LOC_Os12g02050
Translocation	Chr11	12699509	Chr7	14859316	LOC_Os11g22130

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