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Mutant Information

Mutant Name	FN1368-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1368-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 40

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4455457	A-C	HET	INTRON
SBS	Chr1	12173648	T-A	HET	INTERGENIC
SBS	Chr1	13905868	G-A	HET	INTERGENIC
SBS	Chr1	17209767	C-T	HET	INTERGENIC
SBS	Chr1	20020961	G-A	HET	INTERGENIC
SBS	Chr1	26487522	G-A	HET	INTERGENIC
SBS	Chr1	35591143	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g61520
SBS	Chr2	4843656	A-C	HOMO	INTRON
SBS	Chr2	5522422	G-A	HET	INTERGENIC
SBS	Chr2	20378109	A-G	HOMO	INTERGENIC
SBS	Chr2	29739845	A-T	HET	INTRON
SBS	Chr3	8274556	C-A	HET	INTERGENIC
SBS	Chr3	10160556	G-T	HOMO	INTERGENIC
SBS	Chr3	18157017	T-C	HOMO	INTRON
SBS	Chr3	23123639	G-A	HOMO	INTERGENIC
SBS	Chr3	28043010	G-A	HET	INTERGENIC
SBS	Chr3	28267204	A-C	HET	INTERGENIC
SBS	Chr4	1486204	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g03450
SBS	Chr4	6039273	A-G	HET	INTERGENIC
SBS	Chr4	6104522	T-C	HOMO	INTERGENIC
SBS	Chr4	11077390	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	20224769	A-C	HET	UTR_3_PRIME
SBS	Chr5	3893937	T-A	HET	INTERGENIC
SBS	Chr6	8846320	A-C	HOMO	INTERGENIC
SBS	Chr7	6733541	C-T	HET	INTRON
SBS	Chr7	7709894	G-A	HOMO	INTERGENIC
SBS	Chr7	17845212	T-C	HET	UTR_3_PRIME
SBS	Chr8	12324413	C-T	HOMO	INTERGENIC
SBS	Chr10	1066136	G-A	HET	INTERGENIC
SBS	Chr10	7157238	T-C	HET	INTERGENIC
SBS	Chr10	7341975	A-C	HET	INTRON
SBS	Chr10	7748110	C-A	HET	INTERGENIC
SBS	Chr10	9076400	G-A	HET	INTERGENIC
SBS	Chr11	11642319	G-A	HET	STOP_GAINED	LOC_Os11g20150
SBS	Chr11	14197093	G-C	HET	STOP_GAINED	LOC_Os11g24930
SBS	Chr11	16839493	G-A	HET	INTERGENIC
SBS	Chr12	8435774	C-T	HET	INTERGENIC
SBS	Chr12	19693346	A-T	HOMO	INTERGENIC
SBS	Chr12	24473110	G-C	HET	INTERGENIC
SBS	Chr12	26261684	A-G	HOMO	INTERGENIC

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	1202038	1202039	1
Deletion	Chr2	1365863	1365864	1
Deletion	Chr10	2754854	2754857	3
Deletion	Chr11	4211587	4211588	1
Deletion	Chr8	4376574	4376575	1
Deletion	Chr9	4682743	4682744	1	LOC_Os09g08860
Deletion	Chr1	4701821	4701822	1
Deletion	Chr1	5105455	5105460	5
Deletion	Chr2	6157358	6157360	2
Deletion	Chr1	6588217	6588313	96
Deletion	Chr7	6947129	6947130	1
Deletion	Chr1	8671403	8671404	1
Deletion	Chr2	11148664	11148665	1
Deletion	Chr2	11180711	11180716	5	LOC_Os02g19170
Deletion	Chr12	13714211	13714219	8
Deletion	Chr8	24848307	24848318	11
Deletion	Chr4	34860083	34860084	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	5775911	5775911	1
Insertion	Chr3	181913	181914	2
Insertion	Chr10	17838567	17838570	4
Insertion	Chr11	6465124	6465124	1	LOC_Os11g11620

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	7135489	8290315	LOC_Os09g12480

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr10	1222875	Chr8	16258228
Translocation	Chr11	5008488	Chr10	7344617
Translocation	Chr8	16434829	Chr1	18714984

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