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Mutant Information

Mutant Name	FN1369-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1369-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Albino and Normal (6.67% Albino) TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18796985	A-G	HET	INTERGENIC
SBS	Chr1	24031522	A-C	HET	INTERGENIC
SBS	Chr1	42289718	A-G	HET	INTERGENIC
SBS	Chr10	1071114	A-T	Homo	INTRON
SBS	Chr10	8401433	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g16860
SBS	Chr2	15097934	C-T	HET	SYNONYMOUS_CODING
SBS	Chr2	26429431	A-G	HET	INTRON
SBS	Chr2	28197941	G-A	Homo	INTERGENIC
SBS	Chr3	30670263	G-A	Homo	INTERGENIC
SBS	Chr3	3345412	C-T	HET	INTERGENIC
SBS	Chr3	4264734	T-C	HET	INTERGENIC
SBS	Chr3	7257229	G-A	HET	INTERGENIC
SBS	Chr3	8751426	G-A	HET	SPLICE_SITE_REGION
SBS	Chr4	13241215	C-T	HET	INTERGENIC
SBS	Chr4	1605980	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	19045630	C-T	HET	INTRON
SBS	Chr5	10340717	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g17990
SBS	Chr5	16640887	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g28420
SBS	Chr5	20369899	T-A	HET	INTERGENIC
SBS	Chr7	5740579	C-T	HET	INTERGENIC
SBS	Chr7	8503965	T-A	HET	INTERGENIC
SBS	Chr8	22414984	T-A	Homo	UTR_3_PRIME
SBS	Chr8	23245283	T-A	HET	INTERGENIC
SBS	Chr8	3558247	A-G	Homo	INTERGENIC
SBS	Chr9	10489313	T-G	Homo	INTRON
SBS	Chr9	924126	A-G	Homo	INTRON

Deletions: 31

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	1150238	1150239	1
Deletion	Chr9	3039269	3039271	2
Deletion	Chr1	3312974	3315306	2332	2
Deletion	Chr2	3710844	3710845	1
Deletion	Chr3	5203978	5203983	5
Deletion	Chr6	6326105	6326127	22
Deletion	Chr6	6338076	6338077	1
Deletion	Chr12	6643334	6643547	213	LOC_Os12g12115
Deletion	Chr12	8380055	8380059	4
Deletion	Chr9	9199067	9199068	1
Deletion	Chr2	9909052	9909053	1
Deletion	Chr6	12203800	12203801	1
Deletion	Chr6	12361837	12361838	1
Deletion	Chr7	12413923	12413928	5
Deletion	Chr12	12694284	12694285	1
Deletion	Chr1	13954001	13980000	26000	4
Deletion	Chr4	14803105	14803106	1
Deletion	Chr7	14854529	14854532	3
Deletion	Chr8	17449121	17449122	1
Deletion	Chr6	18087954	18087955	1
Deletion	Chr6	19510936	19510942	6
Deletion	Chr5	22222089	22222090	1
Deletion	Chr2	22412606	22412610	4
Deletion	Chr1	22533612	22533616	4
Deletion	Chr3	23096682	23096700	18
Deletion	Chr8	23328525	23328526	1
Deletion	Chr2	23738233	23738234	1
Deletion	Chr12	24181333	24181648	315
Deletion	Chr5	25413702	25413712	10
Deletion	Chr5	27180711	27180712	1
Deletion	Chr1	31076448	31076451	3

Insertions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	22375831	22375831	1
Insertion	Chr10	2543900	2543932	33	LOC_Os10g05190
Insertion	Chr10	2607012	2607074	63	LOC_Os10g05270
Insertion	Chr12	25845451	25845464	14
Insertion	Chr12	3661338	3661339	2
Insertion	Chr2	34436552	34436552	1
Insertion	Chr2	7749768	7749769	2
Insertion	Chr3	31605866	31605867	2	LOC_Os03g55540
Insertion	Chr4	20356376	20356377	2
Insertion	Chr5	24126885	24126885	1
Insertion	Chr5	733095	733096	2
Insertion	Chr6	18308189	18308189	1
Insertion	Chr6	20840493	20840493	1
Insertion	Chr6	4833590	4833593	4
Insertion	Chr8	20286337	20286340	4
Insertion	Chr8	25381036	25381041	6	LOC_Os08g40090
Insertion	Chr9	4642134	4642134	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	6643338	20105659
Inversion	Chr12	6643528	21555787	LOC_Os12g12115
Inversion	Chr6	7687437	8759926	LOC_Os06g15420

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	934980	Chr6	7687436
Translocation	Chr9	956564	Chr6	8759966	LOC_Os06g15420
Translocation	Chr12	12408507	Chr9	16546853	2
Translocation	Chr2	25580913	Chr1	31477562	2
Translocation	Chr2	25580924	Chr1	31482662	2

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