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Mutant Information

Mutant Name	FN1371-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1371-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5011172	C-T	HET	INTRON
SBS	Chr1	15527524	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g27800
SBS	Chr1	19503162	G-T	HET	INTERGENIC
SBS	Chr1	25385238	T-A	Homo	INTERGENIC
SBS	Chr1	26418162	G-T	Homo	INTERGENIC
SBS	Chr1	37102784	G-A	Homo	INTERGENIC
SBS	Chr1	38970513	A-G	Homo	INTERGENIC
SBS	Chr2	10112219	C-A	Homo	INTRON
SBS	Chr2	13300538	C-T	HET	INTERGENIC
SBS	Chr3	10188230	A-G	HET	INTRON
SBS	Chr3	20236885	T-A	HET	INTERGENIC
SBS	Chr4	4967795	G-A	Homo	INTRON
SBS	Chr4	9870856	C-G	HET	INTERGENIC
SBS	Chr4	15463632	G-A	HET	INTERGENIC
SBS	Chr4	30973737	G-A	Homo	INTERGENIC
SBS	Chr5	7592009	A-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g13700
SBS	Chr5	7863982	A-T	Homo	INTERGENIC
SBS	Chr5	18516988	C-A	HET	INTERGENIC
SBS	Chr5	26551368	C-A	HET	INTRON
SBS	Chr6	12773057	T-A	HET	INTERGENIC
SBS	Chr6	12773058	C-A	HET	INTERGENIC
SBS	Chr7	9240332	C-T	HET	INTERGENIC
SBS	Chr7	22461145	C-G	HET	INTERGENIC
SBS	Chr8	10503253	A-G	Homo	INTERGENIC
SBS	Chr8	27746761	C-T	Homo	INTERGENIC
SBS	Chr9	8008084	C-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g13690
SBS	Chr9	12249261	A-G	Homo	INTERGENIC
SBS	Chr10	6340150	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g11454
SBS	Chr10	12494393	C-A	HET	INTERGENIC
SBS	Chr11	2349392	A-G	HET	INTERGENIC
SBS	Chr11	7538600	C-G	HET	INTERGENIC
SBS	Chr11	18023555	T-A	HET	SYNONYMOUS_CODING
SBS	Chr11	28863297	T-A	HET	INTERGENIC
SBS	Chr12	7204675	G-A	HET	INTERGENIC
SBS	Chr12	8925070	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g15630
SBS	Chr12	16259786	T-C	HET	INTERGENIC

Deletions: 38

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	2278684	2278698	14
Deletion	Chr10	3170499	3170501	2
Deletion	Chr1	3288486	3298013	9527	6
Deletion	Chr2	3332805	3332806	1
Deletion	Chr12	3424152	3424159	7
Deletion	Chr4	4964219	4964224	5
Deletion	Chr11	8467816	8468144	328	LOC_Os11g15040
Deletion	Chr10	9104745	9104746	1	LOC_Os10g17960
Deletion	Chr6	10108926	10108932	6
Deletion	Chr12	11064522	11064525	3
Deletion	Chr11	11107384	11107385	1
Deletion	Chr3	11386449	11386450	1
Deletion	Chr10	11557482	11557484	2
Deletion	Chr1	12224509	12224511	2
Deletion	Chr11	12573407	12573422	15	LOC_Os11g21900
Deletion	Chr1	14054001	14214000	160000	24
Deletion	Chr11	14518650	14518652	2
Deletion	Chr10	17353426	17353475	49
Deletion	Chr4	18751574	18751583	9
Deletion	Chr11	18830529	18830536	7
Deletion	Chr4	19439565	19439567	2
Deletion	Chr2	19491370	19491372	2
Deletion	Chr5	19603037	19603052	15
Deletion	Chr8	19768001	19798000	30000	4
Deletion	Chr8	21660278	21660283	5
Deletion	Chr7	22199943	22199955	12
Deletion	Chr12	22653567	22653568	1	LOC_Os12g36940
Deletion	Chr11	23512377	23512392	15	LOC_Os11g39490
Deletion	Chr4	23587595	23587599	4
Deletion	Chr8	23844924	23844950	26
Deletion	Chr11	24843990	24852538	8548	2
Deletion	Chr11	25011216	25011224	8
Deletion	Chr1	25354687	25354702	15
Deletion	Chr4	28516837	28516847	10
Deletion	Chr2	30844068	30844081	13
Deletion	Chr2	31062462	31062464	2
Deletion	Chr4	32334474	32334771	297
Deletion	Chr2	35246512	35246518	6

Insertions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	10496638	10496639	2
Insertion	Chr2	9264875	9264875	1
Insertion	Chr4	23681155	23681155	1
Insertion	Chr5	12064532	12064532	1	LOC_Os05g20560
Insertion	Chr7	25028812	25028812	1
Insertion	Chr8	14844730	14844731	2
Insertion	Chr10	13262373	13262416	44
Insertion	Chr11	15729242	15729294	53
Insertion	Chr11	22670209	22670284	76
Insertion	Chr11	23031411	23031413	3
Insertion	Chr11	27392656	27392666	11
Insertion	Chr11	28218065	28218065	1
Insertion	Chr12	13016242	13016242	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	15248943	15392062	2

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	8009749	Chr2	10396049

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