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Mutant Information

Mutant Name	FN1372-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1372-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 22

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16116056	T-C	HET	INTERGENIC
SBS	Chr1	17478201	A-G	HET	INTERGENIC
SBS	Chr1	9632093	C-G	HOMO	INTRON
SBS	Chr11	15231689	G-A	HET	INTERGENIC
SBS	Chr11	23340342	C-T	HET	INTERGENIC
SBS	Chr11	8884583	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g15670
SBS	Chr12	23781681	T-C	HET	SYNONYMOUS_CODING
SBS	Chr12	2657405	C-T	HOMO	INTERGENIC
SBS	Chr2	15116279	T-A	HOMO	INTERGENIC
SBS	Chr2	15732228	A-T	HOMO	INTRON
SBS	Chr2	24762279	G-A	HET	INTERGENIC
SBS	Chr2	35025579	A-G	HOMO	INTERGENIC
SBS	Chr3	19106930	A-T	HOMO	INTERGENIC
SBS	Chr4	30488502	C-T	HET	INTRON
SBS	Chr4	6826752	G-A	HOMO	INTERGENIC
SBS	Chr7	19131388	G-A	HET	INTERGENIC
SBS	Chr7	2349647	C-T	HOMO	INTERGENIC
SBS	Chr7	4003677	G-A	HET	INTERGENIC
SBS	Chr8	12405113	T-A	HOMO	INTERGENIC
SBS	Chr8	7425720	C-T	HET	INTERGENIC
SBS	Chr9	12393943	G-C	HET	INTERGENIC
SBS	Chr9	8865979	G-A	HET	SYNONYMOUS_CODING

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	2806630	2806631	1
Deletion	Chr7	3055001	3105000	50000	8
Deletion	Chr4	12044947	12044959	12
Deletion	Chr3	12381292	12381297	5
Deletion	Chr12	12464843	12465007	164
Deletion	Chr5	14388689	14423443	34754	9
Deletion	Chr6	14616417	14616418	1	LOC_Os06g24930
Deletion	Chr6	17171203	17171205	2
Deletion	Chr12	19020001	19056000	36000	5
Deletion	Chr1	20553763	20553768	5
Deletion	Chr7	20882859	20884328	1469
Deletion	Chr7	25837992	25837999	7
Deletion	Chr2	34658926	34658933	7

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	9490478	9490479	2
Insertion	Chr2	17454917	17454918	2	LOC_Os02g29380
Insertion	Chr9	16075323	16075324	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	28028593	28028961

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	9413930	Chr3	21850022	LOC_Os03g39330
Translocation	Chr12	12501955	Chr5	21881840	2

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