Search Results
Mutant Information |
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Mutant Name | FN1372-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN1372-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Phenotype |
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Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 22
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
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SBS | Chr1 | 9632093 | C-G | HOMO | INTRON | |
SBS | Chr1 | 16116056 | T-C | HET | INTERGENIC | |
SBS | Chr1 | 17478201 | A-G | HET | INTERGENIC | |
SBS | Chr2 | 15116279 | T-A | HOMO | INTERGENIC | |
SBS | Chr2 | 15732228 | A-T | HOMO | INTRON | |
SBS | Chr2 | 24762279 | G-A | HET | INTERGENIC | |
SBS | Chr2 | 35025579 | A-G | HOMO | INTERGENIC | |
SBS | Chr3 | 19106930 | A-T | HOMO | INTERGENIC | |
SBS | Chr4 | 6826752 | G-A | HOMO | INTERGENIC | |
SBS | Chr4 | 30488502 | C-T | HET | INTRON | |
SBS | Chr7 | 2349647 | C-T | HOMO | INTERGENIC | |
SBS | Chr7 | 4003677 | G-A | HET | INTERGENIC | |
SBS | Chr7 | 19131388 | G-A | HET | INTERGENIC | |
SBS | Chr8 | 7425720 | C-T | HET | INTERGENIC | |
SBS | Chr8 | 12405113 | T-A | HOMO | INTERGENIC | |
SBS | Chr9 | 8865979 | G-A | HET | SYNONYMOUS_CODING | |
SBS | Chr9 | 12393943 | G-C | HET | INTERGENIC | |
SBS | Chr11 | 8884583 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os11g15670 |
SBS | Chr11 | 15231689 | G-A | HET | INTERGENIC | |
SBS | Chr11 | 23340342 | C-T | HET | INTERGENIC | |
SBS | Chr12 | 2657405 | C-T | HOMO | INTERGENIC | |
SBS | Chr12 | 23781681 | T-C | HET | SYNONYMOUS_CODING |
Deletions: 13
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
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Deletion | Chr7 | 2806630 | 2806631 | 1 | |
Deletion | Chr7 | 3055001 | 3105000 | 50000 | 8 |
Deletion | Chr4 | 12044947 | 12044959 | 12 | |
Deletion | Chr3 | 12381292 | 12381297 | 5 | |
Deletion | Chr12 | 12464843 | 12465007 | 164 | |
Deletion | Chr5 | 14388689 | 14423443 | 34754 | 9 |
Deletion | Chr6 | 14616417 | 14616418 | 1 | LOC_Os06g24930 |
Deletion | Chr6 | 17171203 | 17171205 | 2 | |
Deletion | Chr12 | 19020001 | 19056000 | 36000 | 5 |
Deletion | Chr1 | 20553763 | 20553768 | 5 | |
Deletion | Chr7 | 20882859 | 20884328 | 1469 | |
Deletion | Chr7 | 25837992 | 25837999 | 7 | |
Deletion | Chr2 | 34658926 | 34658933 | 7 |
Insertions: 3
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr2 | 17454917 | 17454918 | 2 | LOC_Os02g29380 |
Insertion | Chr9 | 16075323 | 16075324 | 2 | |
Insertion | Chr12 | 9490478 | 9490479 | 2 |
Inversions: 1
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr6 | 28028593 | 28028961 |
Translocations: 2
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
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Translocation | Chr4 | 9413930 | Chr3 | 21850022 | LOC_Os03g39330 |
Translocation | Chr12 | 12501955 | Chr5 | 21881840 | 2 |