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Mutant Information

Mutant Name	FN1373-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1373-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	16560729	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g31600
SBS	Chr10	4319101	C-A	HET	INTERGENIC
SBS	Chr11	10244442	G-A	Homo	INTRON
SBS	Chr11	9543104	G-A	Homo	INTERGENIC
SBS	Chr2	18046315	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g30310
SBS	Chr2	19115990	C-T	HET	SYNONYMOUS_CODING
SBS	Chr2	22014209	C-T	HET	INTRON
SBS	Chr2	35716447	G-A	HET	INTERGENIC
SBS	Chr2	4870390	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g09490
SBS	Chr3	23886664	G-C	HET	INTERGENIC
SBS	Chr4	14668467	C-T	HET	INTERGENIC
SBS	Chr4	21050234	T-C	HET	INTERGENIC
SBS	Chr5	10943016	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g18840
SBS	Chr5	1965199	A-G	HET	INTERGENIC
SBS	Chr5	24448941	C-A	HET	INTERGENIC
SBS	Chr6	16027038	G-A	HET	INTRON
SBS	Chr6	21062220	G-A	HET	INTERGENIC
SBS	Chr6	21938071	G-A	HET	INTRON
SBS	Chr6	8949199	C-T	HET	INTERGENIC
SBS	Chr7	17696803	A-G	HET	INTERGENIC
SBS	Chr7	21263949	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g35530
SBS	Chr7	9162061	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr8	11115005	A-G	HET	INTERGENIC
SBS	Chr8	1544448	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g03330
SBS	Chr8	17866939	A-T	HET	INTERGENIC
SBS	Chr8	17866940	T-A	Homo	INTERGENIC
SBS	Chr8	27624035	C-G	HET	INTERGENIC
SBS	Chr8	4727519	C-G	Homo	INTERGENIC
SBS	Chr8	8449517	C-T	Homo	INTRON
SBS	Chr9	1621678	C-A	HET	INTERGENIC
SBS	Chr9	61921	G-A	Homo	INTERGENIC

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	3884069	3884072	3
Deletion	Chr1	5687246	5687255	9
Deletion	Chr7	7071265	7071269	4
Deletion	Chr6	8096042	8096043	1
Deletion	Chr12	9971137	9971153	16
Deletion	Chr10	10314976	10314979	3
Deletion	Chr7	10360149	10360163	14
Deletion	Chr7	10361929	10361930	1	LOC_Os07g17530
Deletion	Chr3	10951888	10951893	5
Deletion	Chr8	11658342	11658343	1
Deletion	Chr12	11727859	11727867	8	LOC_Os12g20150
Deletion	Chr10	13603270	13603271	1
Deletion	Chr9	13724000	13724004	4
Deletion	Chr7	16278764	16278765	1	LOC_Os07g27900
Deletion	Chr6	17379356	17379357	1	LOC_Os06g30130
Deletion	Chr11	17976010	17976014	4
Deletion	Chr7	18709609	18709620	11
Deletion	Chr7	19026030	19026032	2
Deletion	Chr1	20429513	20429531	18	LOC_Os01g36772
Deletion	Chr6	21062243	21062244	1
Deletion	Chr3	21284141	21284149	8
Deletion	Chr10	21963548	21963549	1
Deletion	Chr4	23683489	23683493	4	LOC_Os04g39740
Deletion	Chr2	29644711	29644712	1
Deletion	Chr1	31282223	31282224	1
Deletion	Chr2	32947313	32947358	45	LOC_Os02g53780

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	28715122	28715129	8
Insertion	Chr2	6767052	6767052	1
Insertion	Chr2	9175078	9175099	22
Insertion	Chr3	23423067	23423070	4
Insertion	Chr3	29573776	29573776	1
Insertion	Chr4	10517303	10517306	4
Insertion	Chr8	6895267	6895267	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	22600869	22685197	LOC_Os02g37420
Inversion	Chr2	32337327	32608431	LOC_Os02g53270
Inversion	Chr2	32337340	33999464

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	25582593	Chr2	33998471	LOC_Os05g43970

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