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Mutant Information

Mutant Name	FN1374-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1374-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14207549	C-G	Homo	INTERGENIC
SBS	Chr1	18818104	T-C	Homo	INTERGENIC
SBS	Chr1	19412602	G-A	HET	INTERGENIC
SBS	Chr10	20938445	T-C	Homo	INTRON
SBS	Chr10	3252995	T-A	HET	SYNONYMOUS_CODING
SBS	Chr10	3262329	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g06330
SBS	Chr10	6603497	A-G	HET	INTERGENIC
SBS	Chr10	6603506	A-T	HET	INTERGENIC
SBS	Chr10	7454701	C-A	HET	INTERGENIC
SBS	Chr11	14760804	T-C	HET	INTERGENIC
SBS	Chr11	5723626	C-T	HET	INTERGENIC
SBS	Chr11	842213	C-A	HET	INTERGENIC
SBS	Chr2	13577312	T-A	HET	STOP_GAINED	LOC_Os02g22790
SBS	Chr2	16871852	A-G	HET	INTERGENIC
SBS	Chr2	24002827	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr2	35846052	T-G	HET	INTERGENIC
SBS	Chr4	20648675	G-T	Homo	INTERGENIC
SBS	Chr4	6161381	C-T	HET	INTERGENIC
SBS	Chr5	2405706	C-T	HET	INTERGENIC
SBS	Chr5	6815638	C-T	HET	INTERGENIC
SBS	Chr5	7209213	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr7	21461588	T-A	Homo	INTERGENIC
SBS	Chr8	2095454	T-A	HET	INTERGENIC
SBS	Chr8	24986528	G-A	Homo	INTRON
SBS	Chr8	25842605	A-G	Homo	SYNONYMOUS_CODING
SBS	Chr8	7314523	G-T	HET	INTRON
SBS	Chr9	7420194	G-A	HET	SYNONYMOUS_CODING

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	584792	584794	2
Deletion	Chr11	2118267	2118272	5
Deletion	Chr4	4481001	4567000	86000	9
Deletion	Chr10	6297954	6297980	26	LOC_Os10g11354
Deletion	Chr8	7870029	7870033	4	LOC_Os08g13240
Deletion	Chr10	9151453	9151454	1
Deletion	Chr9	9643485	9643486	1
Deletion	Chr10	9645300	9645311	11
Deletion	Chr5	11126637	11126646	9
Deletion	Chr5	11147599	11147608	9
Deletion	Chr11	12274591	12274708	117
Deletion	Chr7	12759644	12759781	137
Deletion	Chr9	13817885	13817893	8
Deletion	Chr6	18199818	18199825	7
Deletion	Chr12	19060407	19060408	1
Deletion	Chr7	19896165	19896173	8
Deletion	Chr6	20466588	20466593	5
Deletion	Chr6	22151729	22151730	1
Deletion	Chr9	22721789	22721790	1
Deletion	Chr5	24493908	24493922	14
Deletion	Chr12	26818157	26818178	21	LOC_Os12g43179
Deletion	Chr2	29109549	29109550	1	LOC_Os02g47640
Deletion	Chr2	34899714	34899730	16
Deletion	Chr2	35865518	35865520	2	LOC_Os02g58700

Insertions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	5689512	5689513	2
Insertion	Chr2	32258332	32258332	1
Insertion	Chr3	12930157	12930162	6	LOC_Os03g22510
Insertion	Chr3	3029054	3029055	2
Insertion	Chr4	6909319	6909322	4
Insertion	Chr6	19259047	19259049	3
Insertion	Chr6	28962180	28962180	1
Insertion	Chr7	23887239	23887240	2
Insertion	Chr7	29629256	29629257	2
Insertion	Chr8	18440520	18440520	1
Insertion	Chr8	24495001	24495001	1
Insertion	Chr9	8292075	8292088	14

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	14589264	15366737	LOC_Os09g25600
Inversion	Chr4	30510787	30836720	LOC_Os04g51500

No Translocation

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