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Mutant Information

Mutant Name	FN1383-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1383-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 21

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18437500	T-A	HOMO	INTERGENIC
SBS	Chr1	25094315	G-A	HOMO	STOP_GAINED	LOC_Os01g43790
SBS	Chr1	26888460	T-C	HOMO	UTR_3_PRIME
SBS	Chr1	7198503	G-A	HET	INTRON
SBS	Chr1	8489118	G-A	HET	INTRON
SBS	Chr10	4857883	G-C	HOMO	INTRON
SBS	Chr11	1899299	C-T	HET	INTRON
SBS	Chr12	14288847	G-A	HET	INTERGENIC
SBS	Chr2	25802029	G-A	HET	INTERGENIC
SBS	Chr3	20053642	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g36150
SBS	Chr3	35528478	C-A	HOMO	INTERGENIC
SBS	Chr3	6924057	C-A	HET	INTERGENIC
SBS	Chr3	8791621	A-T	HOMO	INTRON
SBS	Chr4	11718239	C-G	HET	INTERGENIC
SBS	Chr4	12687985	C-G	HET	INTRON
SBS	Chr5	14067798	G-A	HOMO	INTERGENIC
SBS	Chr5	7753781	T-C	HET	INTERGENIC
SBS	Chr6	6335844	C-T	HET	INTERGENIC
SBS	Chr8	7557098	A-G	HET	INTRON
SBS	Chr9	5257757	A-G	HOMO	INTERGENIC
SBS	Chr9	5972357	G-A	HOMO	INTRON

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	302799	302822	23
Deletion	Chr12	356689	356694	5	LOC_Os12g01590
Deletion	Chr7	1865717	1865734	17
Deletion	Chr8	4121702	4121706	4	LOC_Os08g07360
Deletion	Chr12	10879456	10879462	6
Deletion	Chr12	12957924	12957942	18
Deletion	Chr5	13858815	13858824	9	LOC_Os05g24040
Deletion	Chr2	14818278	14818279	1
Deletion	Chr11	15684052	15684057	5
Deletion	Chr5	16117011	16117012	1
Deletion	Chr5	20180558	20180559	1
Deletion	Chr10	22140946	22140950	4	LOC_Os10g41220
Deletion	Chr6	23323036	23323037	1	LOC_Os06g39300

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	38769877	38769878	2
Insertion	Chr7	25230591	25230599	9
Insertion	Chr9	3415664	3415664	1

No Inversion

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	728454	Chr7	22357990
Translocation	Chr12	1631082	Chr2	30991347	LOC_Os12g03940
Translocation	Chr12	12473619	Chr9	5558926

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