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Mutant Information

Mutant Name	FN1384-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1384-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17399669	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g31770
SBS	Chr1	24657517	G-A	HET	INTERGENIC
SBS	Chr1	27934232	A-T	HET	INTERGENIC
SBS	Chr1	36791686	C-T	HOMO	INTERGENIC
SBS	Chr1	37005819	C-T	HET	UTR_3_PRIME
SBS	Chr1	38498349	G-A	HET	INTERGENIC
SBS	Chr1	40366243	G-A	HOMO	INTERGENIC
SBS	Chr1	7991525	G-T	HET	INTERGENIC
SBS	Chr10	1191786	C-A	HET	START_LOST	LOC_Os10g02920
SBS	Chr10	22382694	G-A	HET	INTERGENIC
SBS	Chr11	11179070	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr11	27294477	C-T	HOMO	INTERGENIC
SBS	Chr12	11578327	G-A	HET	INTRON
SBS	Chr12	2765833	C-T	HET	INTERGENIC
SBS	Chr12	710254	T-G	HET	SYNONYMOUS_CODING
SBS	Chr2	11172287	A-T	HOMO	INTERGENIC
SBS	Chr2	14880048	C-T	HET	INTERGENIC
SBS	Chr2	24514837	C-T	HOMO	INTERGENIC
SBS	Chr2	8715098	A-T	HET	INTERGENIC
SBS	Chr3	2163548	T-C	HET	INTERGENIC
SBS	Chr3	32490353	G-T	HET	INTERGENIC
SBS	Chr4	27656234	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g46650
SBS	Chr5	16890867	T-A	HOMO	INTRON
SBS	Chr5	28496345	C-A	HET	INTERGENIC
SBS	Chr5	28496348	T-C	HET	INTERGENIC
SBS	Chr5	4626375	C-A	HET	UTR_3_PRIME
SBS	Chr6	14026251	C-T	HOMO	INTERGENIC
SBS	Chr6	20866383	G-A	HOMO	INTERGENIC
SBS	Chr6	3075204	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr7	6656326	T-G	HOMO	INTERGENIC
SBS	Chr8	28130065	T-A	HET	INTERGENIC
SBS	Chr8	5127276	G-T	HOMO	INTRON
SBS	Chr8	5127277	C-T	HOMO	INTRON
SBS	Chr9	11627114	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g19430
SBS	Chr9	14584814	C-T	HET	INTRON
SBS	Chr9	15279837	G-T	HET	INTERGENIC
SBS	Chr9	17658022	A-G	HET	INTERGENIC
SBS	Chr9	9846215	G-A	HET	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	549866	549867	1
Deletion	Chr10	1847351	1847368	17
Deletion	Chr3	2225677	2225680	3	LOC_Os03g04690
Deletion	Chr1	3407676	3407684	8
Deletion	Chr3	3412140	3412141	1
Deletion	Chr2	7736034	7736036	2
Deletion	Chr1	9072990	9072991	1
Deletion	Chr2	11095001	11204000	109000	21
Deletion	Chr3	12727113	12727117	4
Deletion	Chr11	13940256	13940257	1
Deletion	Chr2	14155098	14155105	7
Deletion	Chr7	14761353	14761354	1
Deletion	Chr1	15175542	15175551	9
Deletion	Chr3	15851041	15851042	1
Deletion	Chr10	16888601	16888614	13
Deletion	Chr1	17450947	17450949	2
Deletion	Chr5	22740433	22740435	2
Deletion	Chr2	22996180	22996184	4
Deletion	Chr1	24114378	24114388	10
Deletion	Chr2	25008883	25008884	1	LOC_Os02g41680
Deletion	Chr11	28926058	28926066	8
Deletion	Chr1	37999652	37999670	18	LOC_Os01g65460

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	3304208	3304208	1
Insertion	Chr10	13119449	13119449	1
Insertion	Chr10	7430805	7430805	1
Insertion	Chr11	11558331	11558332	2
Insertion	Chr11	24574518	24574519	2
Insertion	Chr12	9331263	9331263	1
Insertion	Chr4	984062	984067	6

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	36660649	36808776	2

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	10654925	Chr2	31786583	2
Translocation	Chr11	10656206	Chr2	31786575	2
Translocation	Chr11	10656209	Chr3	11091592	LOC_Os11g18770
Translocation	Chr11	10656467	Chr3	11091573	LOC_Os11g18770

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