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Mutant Information

Mutant Name	FN1385-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1385-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5063171	A-G	HOMO	INTRON
SBS	Chr1	8679649	G-T	HET	INTERGENIC
SBS	Chr1	8679651	A-T	HET	INTERGENIC
SBS	Chr1	18077388	C-T	HET	INTERGENIC
SBS	Chr1	37885877	G-T	HET	INTERGENIC
SBS	Chr1	38708048	A-G	HOMO	INTERGENIC
SBS	Chr2	6866232	T-A	HET	INTERGENIC
SBS	Chr2	14945829	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g25580
SBS	Chr2	18965108	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	28302896	T-A	HET	INTERGENIC
SBS	Chr3	11174847	C-G	HOMO	UTR_3_PRIME
SBS	Chr3	12738398	T-A	HOMO	INTERGENIC
SBS	Chr3	17022795	T-G	HOMO	INTERGENIC
SBS	Chr3	18736288	A-G	HET	INTRON
SBS	Chr3	32810653	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g57540
SBS	Chr4	8896046	G-T	HET	SYNONYMOUS_CODING
SBS	Chr4	10929307	A-G	HET	INTRON
SBS	Chr4	21930391	G-T	HET	SYNONYMOUS_CODING
SBS	Chr4	25091807	G-A	HET	INTERGENIC
SBS	Chr5	7820929	A-C	HET	INTERGENIC
SBS	Chr5	14449526	G-A	HOMO	UTR_3_PRIME
SBS	Chr6	14670056	C-T	HOMO	INTERGENIC
SBS	Chr6	21154834	T-A	HET	INTERGENIC
SBS	Chr6	21154835	T-A	HET	INTERGENIC
SBS	Chr7	10479225	C-T	HOMO	INTERGENIC
SBS	Chr7	16947690	G-A	HET	INTERGENIC
SBS	Chr7	23902626	A-G	HET	INTERGENIC
SBS	Chr7	25839045	A-T	HET	INTERGENIC
SBS	Chr9	952046	T-C	HET	INTERGENIC
SBS	Chr9	9236679	G-C	HOMO	INTERGENIC
SBS	Chr10	21876	G-A	HET	INTERGENIC
SBS	Chr10	10151417	G-A	HET	STOP_GAINED	LOC_Os10g20220
SBS	Chr11	10667584	G-A	HOMO	STOP_GAINED	LOC_Os11g18790
SBS	Chr11	14751429	T-A	HET	INTRON
SBS	Chr11	16205953	C-A	HOMO	UTR_5_PRIME
SBS	Chr12	1377550	T-A	HET	INTERGENIC
SBS	Chr12	7999913	A-G	HET	INTRON
SBS	Chr12	11449680	G-T	HET	INTERGENIC
SBS	Chr12	18058937	A-T	HET	INTERGENIC
SBS	Chr12	25552330	T-A	HET	INTERGENIC
SBS	Chr12	26143457	C-T	HET	INTERGENIC

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	678405	678408	3
Deletion	Chr3	1861344	1861906	562	LOC_Os03g04060
Deletion	Chr8	2964372	2964399	27
Deletion	Chr1	5038926	5038934	8	LOC_Os01g09770
Deletion	Chr9	5833564	5833566	2
Deletion	Chr5	6148209	6148222	13
Deletion	Chr10	6305599	6305614	15
Deletion	Chr5	6413337	6413338	1
Deletion	Chr12	7727175	7727182	7
Deletion	Chr9	9511897	9511904	7	LOC_Os09g15570
Deletion	Chr2	11000385	11000400	15	LOC_Os02g18850
Deletion	Chr4	13801196	13801207	11
Deletion	Chr4	18054246	18054254	8
Deletion	Chr2	18585157	18585158	1
Deletion	Chr9	19457133	19457135	2	LOC_Os09g32600
Deletion	Chr3	19844001	20655000	811000	124
Deletion	Chr9	21266750	21266763	13	LOC_Os09g36870
Deletion	Chr4	23355490	23355491	1	LOC_Os04g39250
Deletion	Chr4	30611205	30611206	1
Deletion	Chr6	31025770	31025771	1

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr7	8773474	8773474	1
Insertion	Chr7	28669236	28669237	2
Insertion	Chr1	5992110	5992111	2
Insertion	Chr6	3999411	3999412	2
Insertion	Chr9	8979811	8979822	12
Insertion	Chr11	5372649	5372656	8	LOC_Os11g10040

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr8	2148413	2799023
Inversion	Chr8	2148449	2798980
Inversion	Chr9	11017608	11205864

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	360300	Chr3	1861345	LOC_Os03g04060
Translocation	Chr8	2148406	Chr3	19793055

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