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Mutant Information

Mutant Name	FN1389-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1389-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9887308	C-T	HET	INTERGENIC
SBS	Chr1	12651770	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr1	32526290	C-T	HET	UTR_5_PRIME
SBS	Chr2	33307238	A-G	HET	INTRON
SBS	Chr3	21991446	C-G	HET	INTRON
SBS	Chr3	25222710	G-A	HET	INTERGENIC
SBS	Chr3	35136987	G-A	Homo	UTR_5_PRIME
SBS	Chr3	36031191	G-T	HET	INTERGENIC
SBS	Chr4	6706868	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g12170
SBS	Chr4	18124105	T-G	HET	INTRON
SBS	Chr4	34955200	A-G	Homo	INTERGENIC
SBS	Chr5	12112153	G-A	HET	INTERGENIC
SBS	Chr5	14830369	C-T	HET	INTERGENIC
SBS	Chr5	15300018	T-A	HET	INTERGENIC
SBS	Chr6	13246105	A-G	HET	INTERGENIC
SBS	Chr6	14543329	G-A	HET	INTERGENIC
SBS	Chr6	16596929	T-G	Homo	INTRON
SBS	Chr7	10458626	G-T	HET	INTRON
SBS	Chr7	14088285	T-C	HET	INTERGENIC
SBS	Chr7	14088451	T-A	HET	INTERGENIC
SBS	Chr7	17016057	C-T	HET	INTERGENIC
SBS	Chr9	721232	C-T	HET	INTERGENIC
SBS	Chr9	863364	T-A	HET	INTERGENIC
SBS	Chr9	2542818	T-A	HET	INTERGENIC
SBS	Chr10	10455174	C-A	Homo	INTERGENIC
SBS	Chr10	14396361	C-T	HET	INTRON
SBS	Chr10	19592260	C-G	Homo	INTERGENIC
SBS	Chr10	20709105	T-G	Homo	INTERGENIC
SBS	Chr10	22005794	T-A	HET	INTERGENIC
SBS	Chr11	3630424	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g07225
SBS	Chr11	27765419	G-A	HET	INTRON
SBS	Chr12	6893438	G-T	Homo	INTRON
SBS	Chr12	13210823	C-T	Homo	INTERGENIC
SBS	Chr12	15459930	T-A	HET	INTERGENIC
SBS	Chr12	15607494	T-C	HET	INTRON

Deletions: 36

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	175507	175509	2
Deletion	Chr4	298915	309262	10347	LOC_Os04g01439
Deletion	Chr1	809421	809424	3
Deletion	Chr11	2683793	2683798	5
Deletion	Chr1	2743398	2752975	9577	2
Deletion	Chr1	3665198	3665202	4	LOC_Os01g07620
Deletion	Chr3	4552256	4552257	1
Deletion	Chr1	6432555	6432556	1	LOC_Os01g11880
Deletion	Chr8	7266353	7266361	8
Deletion	Chr3	7439450	7439452	2
Deletion	Chr5	8235960	8235962	2
Deletion	Chr1	9797899	9797902	3
Deletion	Chr12	12051331	12051332	1
Deletion	Chr7	12427752	12427756	4
Deletion	Chr7	13504503	13504532	29
Deletion	Chr8	14524001	14569000	45000	11
Deletion	Chr8	16922091	16922092	1
Deletion	Chr1	17436990	17436995	5
Deletion	Chr6	18791046	18791049	3
Deletion	Chr1	20455045	20455058	13
Deletion	Chr7	21165365	21165370	5
Deletion	Chr5	22300882	22300884	2
Deletion	Chr12	22471189	22471190	1
Deletion	Chr6	22687001	22794000	107000	15
Deletion	Chr6	23895267	23895268	1
Deletion	Chr12	24525460	24525462	2	LOC_Os12g39700
Deletion	Chr8	26079252	26079253	1
Deletion	Chr11	26714589	26714590	1
Deletion	Chr12	27291929	27291930	1
Deletion	Chr11	28172001	28211000	39000	6
Deletion	Chr3	29383315	29383419	104
Deletion	Chr1	29715567	29715568	1
Deletion	Chr6	30787733	30787757	24
Deletion	Chr2	34070556	34070557	1
Deletion	Chr1	40899863	40899867	4
Deletion	Chr1	41690782	41690792	10

Insertions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr6	5718480	5718481	2
Insertion	Chr1	2285352	2285352	1
Insertion	Chr1	11052183	11052184	2
Insertion	Chr1	14871061	14871065	5
Insertion	Chr1	16209500	16209500	1
Insertion	Chr2	34287786	34287789	4
Insertion	Chr3	30494350	30494350	1
Insertion	Chr4	20974079	20974086	8
Insertion	Chr5	3916730	3916730	1
Insertion	Chr5	8933206	8933206	1
Insertion	Chr5	21451997	21451998	2
Insertion	Chr7	27282369	27282370	2
Insertion	Chr8	14841825	14841825	1	LOC_Os08g24560
Insertion	Chr8	28276174	28276175	2
Insertion	Chr9	5009001	5009004	4
Insertion	Chr10	7138490	7138490	1
Insertion	Chr11	10895601	10895601	1
Insertion	Chr11	11652580	11652582	3
Insertion	Chr11	12120993	12121045	53

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	6632107	6662292
Inversion	Chr2	7838671	7906221
Inversion	Chr2	7853090	7906222	LOC_Os02g14300

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	17250533	Chr4	5000289	LOC_Os04g09380
Translocation	Chr11	17492770	Chr3	25243467

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