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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	30654149	G-A	HOMO	INTERGENIC
SBS	Chr2	15973056	A-G	HOMO	INTRON
SBS	Chr2	16104784	G-A	HOMO	INTERGENIC
SBS	Chr2	27868540	A-G	HET	INTERGENIC
SBS	Chr3	23301318	G-A	HET	INTERGENIC
SBS	Chr4	6703434	G-A	HOMO	INTERGENIC
SBS	Chr4	9487972	T-C	HET	INTERGENIC
SBS	Chr5	8911579	C-T	HOMO	INTERGENIC
SBS	Chr5	14050171	A-G	HOMO	INTERGENIC
SBS	Chr5	24823824	G-A	HOMO	INTERGENIC
SBS	Chr5	29886601	T-A	HOMO	INTRON
SBS	Chr6	10680127	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g18810
SBS	Chr6	25338047	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g42200
SBS	Chr6	28112971	C-A	HOMO	INTERGENIC
SBS	Chr6	29771975	T-C	HET	INTRON
SBS	Chr6	30814290	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g50910
SBS	Chr6	30907354	T-A	HET	UTR_3_PRIME
SBS	Chr7	13092163	A-G	HOMO	SYNONYMOUS_CODING
SBS	Chr7	13123592	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g23290
SBS	Chr7	14123900	G-A	HET	INTRON
SBS	Chr7	26804921	T-G	HOMO	INTERGENIC
SBS	Chr8	1315703	C-A	HOMO	INTERGENIC
SBS	Chr8	10171056	C-A	HET	INTERGENIC
SBS	Chr8	13636524	T-C	HET	INTERGENIC
SBS	Chr8	16927927	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g27790
SBS	Chr9	4091276	C-T	HET	INTRON
SBS	Chr9	15312757	G-A	HET	INTERGENIC
SBS	Chr10	9339915	C-T	HOMO	INTERGENIC
SBS	Chr10	20951101	C-T	HET	INTERGENIC
SBS	Chr11	9284013	C-T	HOMO	INTERGENIC
SBS	Chr11	11252415	C-A	HOMO	SYNONYMOUS_CODING
SBS	Chr11	16142767	G-A	HET	INTERGENIC
SBS	Chr11	17542950	C-A	HOMO	STOP_GAINED	LOC_Os11g30170
SBS	Chr12	15910129	G-C	HOMO	INTRON
SBS	Chr12	22091005	T-C	HOMO	INTRON
SBS	Chr12	25437876	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g41080

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	548233	548237	4
Deletion	Chr6	792567	792568	1
Deletion	Chr11	2258251	2258252	1
Deletion	Chr8	3346529	3346532	3
Deletion	Chr12	3702058	3702059	1
Deletion	Chr8	6332584	6332586	2	LOC_Os08g10770
Deletion	Chr9	6710705	6710710	5
Deletion	Chr12	8797140	8797142	2	LOC_Os12g15400
Deletion	Chr12	9017320	9017338	18
Deletion	Chr5	9231882	9231883	1
Deletion	Chr5	9279376	9279387	11	LOC_Os05g16390
Deletion	Chr7	9308924	9357532	48608	6
Deletion	Chr10	9699861	9699865	4
Deletion	Chr7	13091737	13098058	6321	2
Deletion	Chr7	13097240	13097249	9
Deletion	Chr2	14426795	14426803	8	LOC_Os02g24880
Deletion	Chr7	15875161	15875170	9
Deletion	Chr8	17761388	17761397	9
Deletion	Chr8	17763385	17763389	4
Deletion	Chr2	19533017	19533026	9	LOC_Os02g32880
Deletion	Chr7	21014561	21027795	13234	3
Deletion	Chr10	21414178	21415812	1634
Deletion	Chr7	21420925	21424012	3087	LOC_Os07g35760
Deletion	Chr2	23745222	23745227	5
Deletion	Chr7	26804925	26804933	8

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr3	12624598	12624600	3
Insertion	Chr5	21765747	21765750	4
Insertion	Chr6	17821097	17821097	1
Insertion	Chr7	29661649	29661650	2
Insertion	Chr9	8981681	8981682	2
Insertion	Chr11	8658274	8658292	19
Insertion	Chr11	26129615	26129616	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	13098052	13130448
Inversion	Chr7	13128289	13130455

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr6	12202200	Chr1	34372952
Translocation	Chr5	20012320	Chr4	22380840
Translocation	Chr10	21025387	Chr9	13866584
Translocation	Chr10	21026763	Chr9	13866541

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