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Mutant Information

Mutant Name	FN1394-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1394-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3432736	A-G	HET	SYNONYMOUS_CODING
SBS	Chr1	8526520	C-T	HET	INTERGENIC
SBS	Chr1	13447419	A-T	HET	INTERGENIC
SBS	Chr1	17737015	T-C	HET	INTERGENIC
SBS	Chr1	20791210	A-T	HET	INTERGENIC
SBS	Chr2	19266649	A-T	HET	INTERGENIC
SBS	Chr2	27735755	C-T	HOMO	INTERGENIC
SBS	Chr3	5365719	C-T	HET	INTERGENIC
SBS	Chr3	8065852	T-A	HET	INTERGENIC
SBS	Chr3	15942948	T-A	HOMO	INTRON
SBS	Chr3	23287567	G-C	HOMO	INTERGENIC
SBS	Chr3	24362890	G-T	HOMO	INTERGENIC
SBS	Chr3	28013903	C-A	HET	INTERGENIC
SBS	Chr3	30231722	C-A	HET	INTRON
SBS	Chr4	5530741	C-G	HOMO	INTERGENIC
SBS	Chr4	13749138	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g24070
SBS	Chr4	17631122	T-A	HOMO	INTERGENIC
SBS	Chr4	33496923	G-T	HET	INTERGENIC
SBS	Chr6	2039383	A-G	HET	UTR_3_PRIME
SBS	Chr6	12472657	C-T	HOMO	INTRON
SBS	Chr7	13394288	A-T	HET	INTERGENIC
SBS	Chr7	17070887	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g29160
SBS	Chr7	18213917	C-A	HET	INTRON
SBS	Chr8	23407762	C-T	HOMO	INTERGENIC
SBS	Chr8	25512125	G-C	HOMO	INTERGENIC
SBS	Chr9	1254066	C-T	HOMO	INTERGENIC
SBS	Chr9	6775321	C-A	HET	INTERGENIC
SBS	Chr9	14135575	A-G	HET	INTERGENIC
SBS	Chr9	21387400	A-G	HET	INTERGENIC
SBS	Chr10	7715842	C-T	HOMO	INTERGENIC
SBS	Chr10	19242552	A-G	HET	INTERGENIC
SBS	Chr11	634206	C-T	HOMO	INTERGENIC
SBS	Chr11	3439128	T-C	HOMO	INTERGENIC
SBS	Chr11	13013098	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g22630
SBS	Chr12	5792791	G-A	HET	INTERGENIC
SBS	Chr12	5807696	T-A	HET	INTERGENIC
SBS	Chr12	9334460	G-A	HET	INTRON
SBS	Chr12	13982286	C-T	HET	SYNONYMOUS_CODING

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	4173253	4173260	7
Deletion	Chr3	5655023	5655024	1
Deletion	Chr4	6147462	6147465	3	LOC_Os04g11240
Deletion	Chr6	7447679	7447680	1
Deletion	Chr3	11137441	11137442	1
Deletion	Chr1	11261820	11261821	1
Deletion	Chr3	11487828	11487830	2
Deletion	Chr1	11658227	11658228	1
Deletion	Chr4	11876158	11876167	9
Deletion	Chr9	12583905	12583907	2	LOC_Os09g20910
Deletion	Chr6	13135928	13135931	3	LOC_Os06g22580
Deletion	Chr9	13662619	13662629	10
Deletion	Chr6	14094565	14094566	1
Deletion	Chr2	15936398	15936399	1
Deletion	Chr3	18103775	18103784	9
Deletion	Chr5	19645376	19645378	2
Deletion	Chr7	22301295	22301297	2
Deletion	Chr1	24719242	24719257	15
Deletion	Chr1	24784441	24784455	14	LOC_Os01g43350
Deletion	Chr11	25098143	25098144	1
Deletion	Chr6	26665343	26665349	6	LOC_Os06g44210
Deletion	Chr4	28117988	28117989	1	LOC_Os04g47380
Deletion	Chr2	28274308	28274313	5
Deletion	Chr2	35844001	35938000	94000	16

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	29365387	29365389	3	LOC_Os02g47980
Insertion	Chr6	8005884	8005884	1
Insertion	Chr6	16147453	16147453	1
Insertion	Chr7	12674433	12674434	2
Insertion	Chr11	535206	535206	1	LOC_Os11g02000

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	11273955	11278091	LOC_Os07g19050

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	2724268	Chr1	13710389
Translocation	Chr7	3757718	Chr2	35842954	2
Translocation	Chr7	3759184	Chr2	35843926	LOC_Os02g58650
Translocation	Chr4	16584178	Chr2	35843965	2
Translocation	Chr4	16584214	Chr2	35842968	2

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