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Mutant Information

Mutant Name	FN1405-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1405-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11986787	C-G	HET	INTERGENIC
SBS	Chr1	17450265	A-C	HET	INTERGENIC
SBS	Chr1	19106605	G-A	HET	INTERGENIC
SBS	Chr1	21442377	G-A	HOMO	INTERGENIC
SBS	Chr10	22499904	G-A	HOMO	INTERGENIC
SBS	Chr10	4506032	T-A	HET	INTERGENIC
SBS	Chr10	8291484	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g16630
SBS	Chr11	18226398	G-T	HOMO	INTERGENIC
SBS	Chr11	20871147	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g35590
SBS	Chr11	28685821	T-C	HET	INTERGENIC
SBS	Chr11	8714558	T-C	HOMO	INTERGENIC
SBS	Chr12	18920838	G-T	HOMO	INTERGENIC
SBS	Chr12	18920839	A-T	HOMO	INTERGENIC
SBS	Chr12	23860826	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g38830
SBS	Chr12	2388292	A-C	HET	INTERGENIC
SBS	Chr2	5893467	G-A	HET	INTERGENIC
SBS	Chr2	7843195	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g14280
SBS	Chr2	7843196	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g14280
SBS	Chr3	5926907	A-T	HOMO	INTRON
SBS	Chr4	29497624	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g49430
SBS	Chr5	26615447	T-A	HET	INTERGENIC
SBS	Chr6	24330371	C-T	HET	INTERGENIC
SBS	Chr6	27918525	C-T	HET	INTERGENIC
SBS	Chr6	3351195	T-C	HET	INTERGENIC
SBS	Chr6	9414937	G-C	HET	INTERGENIC
SBS	Chr8	26447007	C-T	HET	INTERGENIC
SBS	Chr8	5121394	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr9	12942598	T-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g21420
SBS	Chr9	16321832	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr9	3094873	C-T	HET	INTERGENIC

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	700797	700816	19
Deletion	Chr9	2928982	2928993	11
Deletion	Chr9	2978001	3008000	30000	4
Deletion	Chr12	8446323	8446324	1
Deletion	Chr7	14380719	14380721	2
Deletion	Chr12	17037274	17037287	13
Deletion	Chr11	17087458	17087469	11
Deletion	Chr9	17365265	17365273	8
Deletion	Chr4	17657542	17657544	2
Deletion	Chr8	19136669	19136674	5	LOC_Os08g30990
Deletion	Chr9	20821382	20821389	7
Deletion	Chr1	25687860	25687865	5
Deletion	Chr8	26395118	26395138	20	LOC_Os08g41790
Deletion	Chr11	28689826	28690165	339
Deletion	Chr2	33003720	33003731	11
Deletion	Chr4	35093000	35093002	2

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	11895574	11895574	1
Insertion	Chr11	28794547	28794554	8	LOC_Os11g47730
Insertion	Chr4	19487614	19487614	1
Insertion	Chr6	11668089	11668090	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	163604	13675535
Inversion	Chr8	163655	13912724	LOC_Os08g23100
Inversion	Chr8	13930609	19107766	2
Inversion	Chr8	13930789	19107766	2

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	163601	Chr4	31765217	LOC_Os04g53330
Translocation	Chr9	11142067	Chr4	31765549	2
Translocation	Chr9	11144395	Chr4	31765200	LOC_Os04g53330
Translocation	Chr8	13674878	Chr2	4857905	LOC_Os02g09460
Translocation	Chr8	13675135	Chr2	4857897	LOC_Os02g09460
Translocation	Chr8	13675528	Chr6	2745486	LOC_Os06g05980
Translocation	Chr8	13912689	Chr4	31765542	2

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