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Mutant Information

Mutant Name	FN1407-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1407-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Low (Between 25% and 74%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	32051386	C-G	HET	INTERGENIC
SBS	Chr10	12684313	T-C	HET	INTERGENIC
SBS	Chr10	7723928	G-A	HET	INTERGENIC
SBS	Chr11	16611014	G-A	HET	INTERGENIC
SBS	Chr11	26534058	C-T	HET	INTERGENIC
SBS	Chr12	16751100	G-A	HET	INTERGENIC
SBS	Chr2	35132292	A-T	HET	INTERGENIC
SBS	Chr2	6506846	A-G	HET	INTERGENIC
SBS	Chr2	6690970	C-T	Homo	INTERGENIC
SBS	Chr3	32036328	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g56234
SBS	Chr4	12796640	G-T	Homo	INTRON
SBS	Chr4	13161026	T-C	Homo	INTERGENIC
SBS	Chr4	15174338	G-A	HET	INTERGENIC
SBS	Chr4	16263205	C-T	HET	INTERGENIC
SBS	Chr4	19528332	C-T	Homo	INTERGENIC
SBS	Chr4	6106173	T-C	Homo	INTERGENIC
SBS	Chr4	7204239	C-T	Homo	INTERGENIC
SBS	Chr5	14444785	G-A	Homo	INTERGENIC
SBS	Chr5	15664829	G-C	Homo	INTERGENIC
SBS	Chr5	15664843	C-T	Homo	INTERGENIC
SBS	Chr5	22531661	C-T	HET	INTERGENIC
SBS	Chr6	5814876	C-T	HET	UTR_3_PRIME
SBS	Chr7	13662741	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g24100
SBS	Chr7	6938573	T-G	HET	INTRON
SBS	Chr8	17387945	T-G	HET	INTERGENIC
SBS	Chr9	17052502	C-T	HET	INTERGENIC

Deletions: 35

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1168967	1168969	2
Deletion	Chr1	1698957	1698959	2
Deletion	Chr7	1800797	1800810	13
Deletion	Chr1	2965486	2965492	6
Deletion	Chr1	3288527	3306523	17996	9
Deletion	Chr11	3505052	3505105	53
Deletion	Chr6	5289013	5289019	6	LOC_Os06g10290
Deletion	Chr7	6963488	6963489	1
Deletion	Chr4	7270315	7270316	1
Deletion	Chr12	7798204	7798220	16	LOC_Os12g13790
Deletion	Chr3	7809010	7809017	7	LOC_Os03g14349
Deletion	Chr8	8163104	8163115	11
Deletion	Chr11	9588355	9588356	1
Deletion	Chr8	9949664	9949665	1
Deletion	Chr2	10240975	10240977	2
Deletion	Chr8	11581749	11581750	1
Deletion	Chr8	13907733	13907744	11
Deletion	Chr6	14137820	14137917	97
Deletion	Chr10	14293230	14293232	2	LOC_Os10g27120
Deletion	Chr8	14612265	14612271	6
Deletion	Chr12	16751094	16751095	1
Deletion	Chr2	16768178	16768292	114
Deletion	Chr2	16789098	16789102	4	LOC_Os02g28400
Deletion	Chr5	18371934	18371944	10
Deletion	Chr8	19763604	19766772	3168	2
Deletion	Chr2	19962404	19962405	1
Deletion	Chr8	20307392	20307438	46
Deletion	Chr1	22203827	22203829	2
Deletion	Chr12	23487723	23487729	6
Deletion	Chr1	23959044	23959048	4
Deletion	Chr1	24533050	24533051	1
Deletion	Chr8	27034935	27034943	8	LOC_Os08g42730
Deletion	Chr3	31606958	31606960	2
Deletion	Chr2	34869724	34872238	2514	LOC_Os02g56880
Deletion	Chr3	35887579	35887585	6

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	17656179	17656193	15
Insertion	Chr10	15519735	15519788	54
Insertion	Chr3	25528254	25528274	21
Insertion	Chr5	4331899	4331899	1
Insertion	Chr5	5939695	5939744	50
Insertion	Chr7	4997471	4997474	4
Insertion	Chr8	25365864	25365864	1	LOC_Os08g40060
Insertion	Chr9	8986295	8986297	3

No Inversion

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	19565714	Chr3	20953079	LOC_Os06g33610
Translocation	Chr6	19565726	Chr3	20954558	2

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