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Mutant Information

Mutant Name	FN1410-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1410-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19039256	G-A	HOMO	INTERGENIC
SBS	Chr1	21212464	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g37890
SBS	Chr1	28578344	C-G	HET	SYNONYMOUS_CODING
SBS	Chr1	6924758	G-A	HOMO	INTERGENIC
SBS	Chr11	12724933	C-G	HET	INTERGENIC
SBS	Chr11	18189678	G-A	HET	INTERGENIC
SBS	Chr11	25587631	G-C	HET	INTERGENIC
SBS	Chr11	9988511	G-A	HET	INTRON
SBS	Chr12	23882110	G-A	HET	INTRON
SBS	Chr2	31223254	T-C	HET	INTERGENIC
SBS	Chr3	11397510	C-T	HET	INTRON
SBS	Chr3	23731131	G-T	HET	INTERGENIC
SBS	Chr3	4078694	G-A	HET	INTERGENIC
SBS	Chr3	7542899	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	22715379	G-A	HOMO	INTERGENIC
SBS	Chr4	27205600	A-T	HET	UTR_3_PRIME
SBS	Chr4	6704485	A-T	HOMO	INTERGENIC
SBS	Chr5	12122345	C-T	HOMO	INTERGENIC
SBS	Chr5	2604852	A-T	HET	INTERGENIC
SBS	Chr6	12865294	G-A	HET	INTERGENIC
SBS	Chr6	17440556	G-C	HET	INTERGENIC
SBS	Chr6	17911557	T-C	HET	INTERGENIC
SBS	Chr6	5868777	C-A	HET	INTRON
SBS	Chr6	7756868	C-T	HET	INTERGENIC
SBS	Chr7	21263739	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os07g35530
SBS	Chr7	26179850	C-A	HET	SYNONYMOUS_CODING
SBS	Chr7	27931129	C-T	HET	INTRON
SBS	Chr7	4161965	C-T	HOMO	INTERGENIC
SBS	Chr7	4671096	G-A	HOMO	INTERGENIC
SBS	Chr7	4866430	A-G	HOMO	INTERGENIC
SBS	Chr9	21714252	T-A	HET	INTERGENIC
SBS	Chr9	21840742	G-A	HET	INTERGENIC
SBS	Chr9	22762737	T-C	HET	INTERGENIC
SBS	Chr9	5808862	T-C	HET	INTERGENIC

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	3065746	3065747	1
Deletion	Chr2	6092591	6092592	1
Deletion	Chr6	7243664	7243690	26
Deletion	Chr5	7883688	7883701	13
Deletion	Chr3	8335333	8335344	11
Deletion	Chr7	8388856	8388858	2
Deletion	Chr3	9880828	9880829	1	LOC_Os03g17760
Deletion	Chr1	10045254	10045260	6
Deletion	Chr12	10667449	10667459	10
Deletion	Chr1	11284425	11284426	1
Deletion	Chr2	15200382	15200384	2
Deletion	Chr10	16331542	16331543	1
Deletion	Chr9	20725001	20812000	87000	18
Deletion	Chr12	21614856	21614877	21	LOC_Os12g35550
Deletion	Chr4	25505063	25505064	1
Deletion	Chr1	26907191	26907193	2
Deletion	Chr1	28177880	28177997	117
Deletion	Chr1	31053269	31053295	26
Deletion	Chr2	32835070	32835071	1
Deletion	Chr3	33937117	33937119	2
Deletion	Chr2	35649194	35649199	5

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	20915879	20915894	16
Insertion	Chr1	4011933	4011934	2
Insertion	Chr1	5671006	5671010	5
Insertion	Chr2	17953013	17953013	1
Insertion	Chr3	24866347	24866349	3	LOC_Os03g44250
Insertion	Chr3	25579459	25579460	2
Insertion	Chr3	35831458	35831458	1
Insertion	Chr4	29204549	29204549	1
Insertion	Chr8	13657406	13657407	2
Insertion	Chr8	5689988	5689988	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	4668678	4713124
Inversion	Chr3	11028908	11750193

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	3800664	Chr6	19614551	2
Translocation	Chr9	3811596	Chr6	19614539	2

Tandem duplications: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Tandem Duplication	Chr3	30195740	30198661	2921	2

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