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Mutant Information

Mutant Name	FN1411-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1411-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 25

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	18462648	C-T	HET	INTERGENIC
SBS	Chr10	2803077	G-T	HOMO	INTERGENIC
SBS	Chr11	17949951	G-A	HET	INTERGENIC
SBS	Chr12	15225477	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g26140
SBS	Chr2	32000977	A-G	HOMO	UTR_3_PRIME
SBS	Chr3	10449382	A-G	HET	INTERGENIC
SBS	Chr3	22652878	G-A	HET	INTRON
SBS	Chr3	30423893	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g53050
SBS	Chr3	7179091	T-A	HET	INTERGENIC
SBS	Chr4	2422220	C-G	HET	INTERGENIC
SBS	Chr4	30519808	G-A	HET	INTRON
SBS	Chr4	32376063	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g54410
SBS	Chr5	15933325	T-A	HET	INTERGENIC
SBS	Chr5	21538080	G-A	HET	INTERGENIC
SBS	Chr5	8769445	C-T	HET	INTRON
SBS	Chr6	20962429	T-A	HET	INTERGENIC
SBS	Chr6	8528860	G-C	HET	INTERGENIC
SBS	Chr7	1638521	A-T	HET	UTR_3_PRIME
SBS	Chr7	27265306	T-C	HET	INTERGENIC
SBS	Chr7	8868613	C-T	HET	INTERGENIC
SBS	Chr8	22402506	G-A	HOMO	UTR_5_PRIME
SBS	Chr8	24487636	C-T	HOMO	INTERGENIC
SBS	Chr8	9625898	C-A	HET	INTERGENIC
SBS	Chr9	21462488	C-T	HOMO	INTERGENIC
SBS	Chr9	21462490	A-C	HOMO	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	591904	591927	23	LOC_Os06g02028
Deletion	Chr5	5584531	5584540	9
Deletion	Chr2	6622209	6622221	12	LOC_Os02g12670
Deletion	Chr9	8424791	8424796	5
Deletion	Chr4	8613030	8613032	2
Deletion	Chr6	9545131	9545146	15
Deletion	Chr6	9909903	9909917	14
Deletion	Chr7	10302088	10302100	12
Deletion	Chr9	16505939	16505940	1
Deletion	Chr8	18462730	18462732	2
Deletion	Chr2	21246001	21299000	53000	4
Deletion	Chr8	23646563	23646565	2
Deletion	Chr2	25475856	25475878	22
Deletion	Chr1	25575001	25654000	79000	15
Deletion	Chr1	25664001	25715000	51000	4
Deletion	Chr5	25871740	25871748	8
Deletion	Chr1	26680533	26680537	4
Deletion	Chr7	28685093	28685095	2
Deletion	Chr7	28771523	28771526	3

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	6323330	6323330	1
Insertion	Chr4	21636569	21636569	1
Insertion	Chr6	728326	728326	1
Insertion	Chr8	7858705	7858705	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	9271087	10846893	LOC_Os07g18300

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	15785784	Chr2	16753852
Translocation	Chr11	27705687	Chr5	23588407	2

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