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Mutant Information

Mutant Name	FN1412-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1412-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9796394	G-A	HET	INTRON
SBS	Chr1	20917991	T-G	HOMO	INTERGENIC
SBS	Chr2	6897894	C-T	HOMO	INTERGENIC
SBS	Chr2	11722189	C-T	HOMO	INTRON
SBS	Chr2	22596542	G-A	HET	INTRON
SBS	Chr2	31577900	G-A	HOMO	INTERGENIC
SBS	Chr3	4637996	T-C	HET	INTERGENIC
SBS	Chr3	11817977	C-G	HET	SYNONYMOUS_CODING
SBS	Chr3	16224567	A-G	HET	INTERGENIC
SBS	Chr3	23685594	T-C	HET	INTERGENIC
SBS	Chr4	10892113	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g19570
SBS	Chr4	14911052	G-C	HET	INTERGENIC
SBS	Chr4	24420115	C-T	HOMO	INTERGENIC
SBS	Chr4	34890346	C-G	HOMO	INTERGENIC
SBS	Chr5	5536199	G-T	HET	INTERGENIC
SBS	Chr5	11214221	C-T	HET	INTERGENIC
SBS	Chr5	16726495	G-A	HET	INTRON
SBS	Chr5	17137151	C-T	HET	INTERGENIC
SBS	Chr6	3454478	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr6	16466193	C-T	HOMO	INTERGENIC
SBS	Chr8	1959960	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g04040
SBS	Chr8	6479761	T-C	HET	SYNONYMOUS_CODING
SBS	Chr9	6268373	G-A	HET	INTERGENIC
SBS	Chr9	19600251	T-A	HOMO	INTRON
SBS	Chr10	17129265	C-T	HOMO	INTERGENIC
SBS	Chr11	5954613	G-A	HET	INTERGENIC
SBS	Chr11	8238788	T-G	HET	INTERGENIC
SBS	Chr11	8285193	T-C	HET	INTERGENIC
SBS	Chr11	12682719	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g22070
SBS	Chr11	12755388	C-T	HET	INTERGENIC
SBS	Chr11	16159965	A-G	HET	INTRON
SBS	Chr12	9453348	G-T	HET	INTERGENIC
SBS	Chr12	15168109	G-A	HET	INTERGENIC
SBS	Chr12	21947235	T-G	HOMO	INTERGENIC
SBS	Chr12	27446979	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g44280

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	988371	988376	5
Deletion	Chr11	1522262	1522673	411	LOC_Os11g03840
Deletion	Chr3	1578417	1578433	16
Deletion	Chr7	3013001	3105000	92000	17
Deletion	Chr3	3177086	3177112	26
Deletion	Chr7	3406211	3406215	4
Deletion	Chr9	4223122	4223123	1
Deletion	Chr9	5809344	5809346	2
Deletion	Chr1	7873162	7873163	1
Deletion	Chr2	7974871	7974884	13
Deletion	Chr9	9106258	9106265	7
Deletion	Chr11	18430645	18430650	5	LOC_Os11g31540
Deletion	Chr3	20509329	20509334	5
Deletion	Chr12	21247509	21247511	2
Deletion	Chr12	25109690	25109694	4
Deletion	Chr5	26128785	26128791	6
Deletion	Chr1	27538098	27538110	12
Deletion	Chr3	29475381	29475385	4	LOC_Os03g51520
Deletion	Chr5	29700920	29700924	4
Deletion	Chr1	29985900	29985901	1
Deletion	Chr6	31134340	31134348	8
Deletion	Chr3	35002688	35002689	1	LOC_Os03g61740
Deletion	Chr1	37684213	37684217	4

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr9	19656411	19656411	1
Insertion	Chr4	31804115	31804115	1
Insertion	Chr8	26530008	26530008	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	20397	822082	LOC_Os02g02390
Inversion	Chr6	5817251	6641621
Inversion	Chr3	12180203	12426432	2

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	12180206	Chr2	2813657	2
Translocation	Chr3	12426435	Chr2	2821755	2

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