Search Results

Mutant Information

Mutant Name	FN1413-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1413-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10779864	G-C	HET	INTERGENIC
SBS	Chr1	17957461	A-G	HOMO	INTERGENIC
SBS	Chr1	39743649	G-A	HET	INTERGENIC
SBS	Chr2	7374601	G-A	HET	INTERGENIC
SBS	Chr3	2943197	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g05860
SBS	Chr3	5235244	T-A	HOMO	INTERGENIC
SBS	Chr3	11500954	G-A	HET	INTERGENIC
SBS	Chr3	14490750	G-A	HET	INTERGENIC
SBS	Chr3	21346697	A-G	HET	INTRON
SBS	Chr4	3109812	T-G	HET	INTRON
SBS	Chr4	18843442	G-A	HOMO	INTERGENIC
SBS	Chr5	7021164	G-T	HET	INTERGENIC
SBS	Chr5	13937124	T-G	HET	INTERGENIC
SBS	Chr5	23272963	G-A	HET	INTERGENIC
SBS	Chr6	5088845	T-C	HET	INTERGENIC
SBS	Chr6	10109716	T-A	HOMO	INTERGENIC
SBS	Chr6	10109717	T-A	HOMO	INTERGENIC
SBS	Chr6	20861967	T-G	HET	INTRON
SBS	Chr6	23439393	A-G	HET	INTRON
SBS	Chr7	17810868	A-G	HET	INTERGENIC
SBS	Chr7	25896922	G-A	HET	INTERGENIC
SBS	Chr7	25896923	C-A	HET	INTERGENIC
SBS	Chr8	3804896	G-A	HET	INTERGENIC
SBS	Chr8	8513465	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g14230
SBS	Chr9	11660927	A-C	HOMO	INTERGENIC
SBS	Chr9	12184436	G-A	HET	INTERGENIC
SBS	Chr10	7209217	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g13350
SBS	Chr11	7391556	G-T	HET	INTERGENIC
SBS	Chr11	24083589	C-T	HET	INTERGENIC
SBS	Chr11	24083590	G-T	HET	INTERGENIC
SBS	Chr12	8463046	T-C	HOMO	INTERGENIC
SBS	Chr12	9700724	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g16920
SBS	Chr12	11895991	C-T	HOMO	INTERGENIC
SBS	Chr12	17156610	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g29000

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	886724	886727	3
Deletion	Chr6	920988	920992	4
Deletion	Chr10	3688370	3688379	9
Deletion	Chr3	4898791	4898792	1
Deletion	Chr7	5648876	5648889	13	LOC_Os07g10490
Deletion	Chr1	5692246	5692248	2
Deletion	Chr1	6127037	6128175	1138
Deletion	Chr2	7465695	7465696	1
Deletion	Chr1	16537933	16537934	1
Deletion	Chr1	17957650	17957655	5
Deletion	Chr8	17983911	17983915	4
Deletion	Chr3	18046051	18046052	1	LOC_Os03g31620
Deletion	Chr10	18899571	18899572	1
Deletion	Chr5	19566257	19566274	17	LOC_Os05g33340
Deletion	Chr5	20114799	20114819	20
Deletion	Chr1	21218787	21218789	2
Deletion	Chr1	24360140	24360141	1
Deletion	Chr8	24508789	24508801	12
Deletion	Chr3	25579158	25579173	15
Deletion	Chr11	27119538	27119541	3
Deletion	Chr2	27462244	27462318	74
Deletion	Chr4	31409347	31409353	6
Deletion	Chr3	36224098	36224099	1
Deletion	Chr1	38391976	38391977	1

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	27595606	27595607	2
Insertion	Chr12	1616132	1616133	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	4593679	4754533
Inversion	Chr10	13930037	14728194	LOC_Os10g28310

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	8009750	Chr2	10395988

Main menu