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Mutant Information

Mutant Name	FN1414-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1414-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Low (Between 25% and 74%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 42

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13583014	A-C	HET	INTRON
SBS	Chr1	14899900	C-T	HET	INTERGENIC
SBS	Chr1	39238795	G-C	HET	UTR_3_PRIME
SBS	Chr2	10502815	T-C	HET	INTERGENIC
SBS	Chr2	21923978	G-T	HET	INTERGENIC
SBS	Chr2	21923979	C-T	HET	INTERGENIC
SBS	Chr2	34418478	C-T	HET	INTERGENIC
SBS	Chr3	4572931	C-T	HET	INTERGENIC
SBS	Chr3	18924031	G-C	HET	INTERGENIC
SBS	Chr3	26711451	T-C	HET	INTERGENIC
SBS	Chr3	29669829	G-A	HET	INTERGENIC
SBS	Chr4	23624265	G-T	HET	INTERGENIC
SBS	Chr5	4773816	T-G	HET	INTERGENIC
SBS	Chr5	26238156	T-C	HET	SPLICE_SITE_REGION
SBS	Chr6	5286483	C-T	HET	INTERGENIC
SBS	Chr6	11850019	T-C	HET	INTERGENIC
SBS	Chr6	13498842	C-T	HET	SYNONYMOUS_CODING
SBS	Chr6	16289118	A-G	HET	INTERGENIC
SBS	Chr6	20471221	T-A	HET	INTERGENIC
SBS	Chr7	3668453	G-A	HET	INTERGENIC
SBS	Chr7	16390688	A-G	HET	INTERGENIC
SBS	Chr7	19044128	T-C	HET	INTERGENIC
SBS	Chr7	19156138	C-T	HET	INTERGENIC
SBS	Chr7	21831517	C-T	HET	INTERGENIC
SBS	Chr7	23995263	T-G	HET	INTERGENIC
SBS	Chr7	24719901	A-G	HET	INTERGENIC
SBS	Chr7	24982855	C-A	HET	INTERGENIC
SBS	Chr8	6351250	T-C	HOMO	INTERGENIC
SBS	Chr8	11108843	C-T	HET	INTERGENIC
SBS	Chr8	20357892	G-C	HET	INTERGENIC
SBS	Chr9	1090403	G-A	HET	INTERGENIC
SBS	Chr9	1560619	C-T	HET	INTERGENIC
SBS	Chr9	10880776	T-C	HET	INTRON
SBS	Chr9	13202778	G-A	HET	INTERGENIC
SBS	Chr9	14459576	G-A	HET	INTERGENIC
SBS	Chr10	7379174	T-C	HET	SYNONYMOUS_CODING
SBS	Chr10	7379178	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g13610
SBS	Chr10	9500864	C-G	HET	INTERGENIC
SBS	Chr10	11598033	G-C	HET	INTRON
SBS	Chr11	11065363	G-A	HET	INTERGENIC
SBS	Chr12	8661012	A-T	HET	INTERGENIC
SBS	Chr12	20228924	A-G	HET	INTERGENIC

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	1612225	1612226	1
Deletion	Chr2	1839938	1839954	16
Deletion	Chr1	2151439	2151442	3
Deletion	Chr9	4349164	4349165	1
Deletion	Chr12	7596809	7596819	10
Deletion	Chr9	9206247	9206271	24
Deletion	Chr6	9555846	9555847	1
Deletion	Chr8	10310209	10310213	4
Deletion	Chr12	14139461	14139462	1
Deletion	Chr11	19301830	19301836	6	LOC_Os11g32690
Deletion	Chr8	19449653	19449660	7
Deletion	Chr1	20527573	20527582	9	LOC_Os01g36860
Deletion	Chr9	20876935	20876954	19
Deletion	Chr11	24987241	24987244	3
Deletion	Chr11	25080373	25080383	10
Deletion	Chr5	26785274	26785282	8
Deletion	Chr4	34417043	34417046	3
Deletion	Chr1	42872711	42872717	6

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	18910158	18910175	18

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	1994820	2721278
Inversion	Chr11	22383715	22634898	2
Inversion	Chr4	24944817	25610042	2
Inversion	Chr7	25732653	26136791
Inversion	Chr7	25732682	26136787
Inversion	Chr8	26074329	26592025	LOC_Os08g41280
Inversion	Chr8	26074374	26592050	LOC_Os08g41280

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	2570542	Chr1	8218348
Translocation	Chr9	11985228	Chr1	28669326
Translocation	Chr9	11985231	Chr1	28668333
Translocation	Chr9	13582089	Chr3	10613348
Translocation	Chr11	17698153	Chr5	22429613
Translocation	Chr11	21289169	Chr4	33826830	2

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