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Mutant Information

Mutant Name	FN1419-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1419-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Low (Between 25% and 74%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	30411237	G-A	HET	INTERGENIC
SBS	Chr1	36366811	G-T	HET	INTERGENIC
SBS	Chr1	39979026	G-T	HET	INTERGENIC
SBS	Chr1	4525546	G-T	HET	INTERGENIC
SBS	Chr11	14711791	C-G	HOMO	INTRON
SBS	Chr11	3333639	T-G	HET	INTRON
SBS	Chr12	15394368	G-A	HOMO	INTERGENIC
SBS	Chr12	1878115	T-C	HET	INTERGENIC
SBS	Chr12	22117068	G-A	HOMO	INTERGENIC
SBS	Chr12	2482500	C-T	HET	INTERGENIC
SBS	Chr12	3048964	A-G	HOMO	SYNONYMOUS_CODING
SBS	Chr2	19497406	C-T	HOMO	INTERGENIC
SBS	Chr2	28027692	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g46000
SBS	Chr3	11197498	C-G	HET	INTRON
SBS	Chr3	21678444	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g38990
SBS	Chr3	33620917	C-T	HET	INTERGENIC
SBS	Chr4	27438291	T-G	HOMO	INTERGENIC
SBS	Chr5	28435086	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g49570
SBS	Chr5	74879	G-T	HET	INTERGENIC
SBS	Chr5	818597	A-T	HET	INTERGENIC
SBS	Chr6	12524160	A-T	HET	INTERGENIC
SBS	Chr6	23723340	C-T	HET	UTR_3_PRIME
SBS	Chr6	25334967	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g42200
SBS	Chr6	3271732	C-T	HET	INTERGENIC
SBS	Chr7	9939535	G-A	HET	INTERGENIC
SBS	Chr8	20724917	G-A	HET	INTERGENIC
SBS	Chr8	24177968	C-T	HOMO	INTERGENIC
SBS	Chr9	10060553	G-T	HET	INTERGENIC
SBS	Chr9	16905094	A-T	HET	INTERGENIC
SBS	Chr9	7284780	G-A	HOMO	INTERGENIC

Deletions: 11

Variant Type	Chromosome	Start	End	Size (bp)
Deletion	Chr7	9054030	9054037	7
Deletion	Chr2	12079171	12079172	1
Deletion	Chr6	16289059	16289060	1
Deletion	Chr7	17506369	17506373	4
Deletion	Chr12	18847656	18847660	4
Deletion	Chr6	22262829	22262830	1
Deletion	Chr7	24213877	24213878	1
Deletion	Chr6	25034011	25034023	12
Deletion	Chr2	26378652	26378654	2
Deletion	Chr2	26844520	26845896	1376
Deletion	Chr1	31903820	31903825	5

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	42357357	42357362	6
Insertion	Chr10	10605567	10605567	1
Insertion	Chr10	20411781	20411781	1
Insertion	Chr12	9490478	9490479	2
Insertion	Chr9	15812876	15812877	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	28885554	29041860	LOC_Os06g47730

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	7534133	Chr2	32734717	2
Translocation	Chr10	13430660	Chr5	5645846	LOC_Os05g10340

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